USPatent applicationPatented

Fab′-epitope complex from HIV-1 cross-neutralizing monoclonal antibody 2F5

Granted 19 Nov 2002 · 2 office actions

Current assignee: AVENTIS HOLDINGS INC. (Sanofi) · originally Sanofi

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Inventors: Emil F. Pai, Arthur Pedyczak, Pele Chong, Michel H. Klein · Examiner: Mary E. Mosher · AU 1648 · TC 1600

Application· this page
9289942
filed 13 Apr 1999
Publication
Not published
not published
Patent
US 6,482,928
granted 19 Nov 2002

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Abstract

The crystal structure of the Fab fragment of Mab 2F5, a potent neutralizer of both laboratory strains and primary clinical isolates of most clades of HIV-1, both uncompleted and completed with the largely conserved peptide sequence ELDKWAS of the viral envelope protein gp41, has been elucidated and the characteristics of peptide-protein interactions determined. Having regard to such determination, the peptide-mimetics are constrained in the three-dimensional structure to provide an increased immunogenicity to the epitope sequence.

Description

23 parts
›FIELD OF INVENTION

This invention relates to crystallography and immunology, and, in particular, to the elucidation, for the first time, of the three-dimensional structure of the Fab′ fragment of monoclonal antibody 2F5.

›BACKGROUND TO THE INVENTION

The monoclonal antibody (Mab) 2F5 is a potent neutralizer of both laboratory strains and primary isolates of most clades of HIV-1, reacting with the largely conserved peptide sequence ELDKWAS (SEQ ID No: 1) of the virus envelope protein gp41, sometimes called the Katinger Epitope (refs. 1 to 7. Throughout this application, various references are referred to in parenthesis to more fully describe the state of the art to which this invention pertains. Full bibliographic information for each citation is found at the end of the specification, immediately preceding the claims. The disclosures of these references are hereby incorporated by reference into the present disclosure). As such, Mab 2F5 is of major interest in the development of an HIV-1 vaccine. Based on studies of immunogenic presentation, the antigenicity of the epitope sequence was concluded to be contingent upon its molecular context (ref. 8).

›SUMMARY OF THE INVENTION · 1 of 2

In accordance with the present invention, there is provided the three-dimensional structure of the Fab′ fragment of Mab 2F5, both uncomplexed and with bound epitope. In the complexed crystalline structure, the seven amino acid sequence (ELDKWAS; SEQ ID No: 1) forms a slightly distorted β turn, with the central DKW core accounting for the majority of protein/peptide interactions, as discussed below.

As can be seen from the detailed analysis provided herein, the slightly-distorted β turn is stabilized by hydrogen bonds from aspartate backbone and sidechain to alanine and tryptophan amides respectively. In the three-dimensional structure, tryptophan and lysine sidechains of the epitope are stacked and parallel.

The elucidation of these three-dimensional structures enables there to be constructed, as set forth herein, peptide-mimetics constrained in the same β-turn-like configuration as seen in the crystal structure of the complex, which would be expected to increase the immunogenicity of the epitope sequence.

Accordingly, in one aspect of the invention, there is provided an isolated crystal of the Fab′ fragment of monoclonal antibody 2F5. The isolation of the crystalline form of the Fab′2F5 fragment enables the three-dimensional structure of such form of the fragment to be determined and such structure is shown in FIG. 1, described below. Certain characterizing parameters have been determined for the crystal structure, as set forth in Table 2 below.

The isolated crystal may be grown in space group P2 1 2 1 2 1 with cell dimensions a=63.6 Å; b=76.4 Å; c=93.4 Å, although the crystals may be grown in another space group with its own unique cell dimensions. The crystalline form of the Fab′2F5 may have the atomic coordinates deposited on Apr. 9, 1999 with the Protein Data Bank under Accession No. 2F5A.

Fab′2F5 molecules organized in the isolated crystal provided herein possess a third hypervariable (V3) loop of the heavy chain comprising amino acid residues H98 to H120, as seen in Table 1 below, which has a three-dimensional structure as shown in FIG. 4, described below and atomic coordinates as shown in Table 3 below.

In accordance with a further aspect of the present invention, there is provided an isolated crystal of the Fab′ fragment of monoclonal antibody 2F5 complexed with a peptide having the amino acid sequence ELDKWAS (SEQ ID No: 1) or a functional analog thereof. The solution of the crystal form of the complex enables the three-dimensional structure of such form of the complex to be determined and the detail of the binding site of the peptide to the Fab′ fragment is shown in FIG. 3, described below. Certain characterizing parameters have been determined for the crystal structure of the complex, as set forth in Table 2 below.

The isolated crystal complex may be grown in space group P2 1 2 1 2 1 with cell dimensions a=58.0 Å; b=65.0 Å; c=175.6 Å, although the crystal complex may be grown in another space group with its own unique cell dimensions. The crystalline form of the complexed form of the Fab′2F5 may have the atomic coordinates deposited with the Protein Data Bank under Accession No. 2F5B on Apr. 9, 1999.

The functional analog of the amino acid sequence ELDKWAS may be one in which lysine is replaced by arginine and/or one in which tryptophan is replaced by tyrosine, phenylalanine or uncharged histadine. One example of such functional analog is ELDRWAS (SEQ ID No: 2).

The elucidation of the crystal structure of the Fab′2F5 fragment when bound to the peptide ELDKWAS (SEQ ID No: 1), provides details of the actual conformation of the peptide epitope when it is bound to the antibody, which will be the same, irrespective of the kind of crystal which is analyzed.

The information which is provided concerning the conformation of peptide epitope then provides the basis for the provision of peptide analogs, peptide mimetics and other antigens which are potentially useful as components of an anti-HIV vaccine.

Accordingly, in another aspect of the present invention, there is provided a synthetic peptide which binds to monoclonal antibody 2F5 and which is constrained to provide a three-dimensional structure corresponding to that for the peptide ELDKWAS (SEQ ID No: 1) shown in FIG. 3 .

This synthetic peptide may contain the amino acid sequence DKW or a functional analog thereof and may be constrained in the slightly distorted β-turn configuration of the three-dimensional structures with the tryptophan and lysine residue chains stacked and parallel, as seen in FIG. 3 and as discussed in more detail below.

The analysis of the three-dimensioned conformation of the epitope indicates that at least one of the tryptophan and lysine sidechains may be substituted by an amino acid which retains the peptide-protein. interaction shown in FIG. 3, which also binds to the Mab. For example, arginine (R) may be used in place of lysine (K) and tyrosine (Y), phenylalanine (F) and uncharged histadine (H) may be used in place of tryptophan (W). Peptides wherein one or more of such amino acid substitution is effected are peptides which contain a “functional analog” of the amino acid sequence DKW, as the term is understood herein, in that the peptide still bind to the monoclonal antibody 2F5.

The synthetic peptide provided herein may be constrained in the required conformation by any convenient means. For example, a disulphide bridge may be used to maintain the amino acid sequence DKW or analogs thereof in the respective orientation of two amino acid residues as shown in FIG. 3 . Such disulphide bridge may be provided between cysteine residues in the synthetic peptide ECDKWCS (SEQ ID No.: 3).

Alternatively, a lactam bond may be used to maintain the amino acid sequence DKW or functional analogs thereof in the respective orientation of the amino acid residues as shown in FIG. 3 . Such lactam bond may be formed between diaminopropionic acid (Dap) and glutamate (E) residues in the synthetic peptide EdapDKWES (SEQ ID No.: 4) or EEDKWDapS (SEQ ID No.: 5).

›SUMMARY OF THE INVENTION · 2 of 2

It is well known that the immunogenicity of peptides may be enhanced by conjugation to carrier molecules, such as protein, including diphtheria toxoid, tetanus toxoid or an outer membrane protein of Haemophilus. Such carrier protein may be linked to the peptide.

There is also provided, in an additional aspect of the invention, a method of making a peptide binding to monoclonal antibody 2F5, which comprises co-crystallizing a Fab′ fragment of the monoclonal antibody 2F5 with a peptide having the amino acid sequence ELDKWAS (SEQ ID No.: 1) or functional analog thereof to form a crystalline complex; analyzing the crystalline complex to determine the three-dimensional orientation of the bound peptide in relation to the Fab′ fragment; and synthesizing a peptide containing at least amino acids DKW or functional analogs thereof constrained in the determined three-dimensioned orientation.

The functional analog of the peptide containing at least amino acids DKW is one which still binds to the monoclonal antibody 2F5. Functional analogs also extend to known analogs of the ELDKWAS motif, including those of the formula X 1 LDKWX 2 S wherein X l is E, A, G or Q and X 2 is A or T.

›BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 is a colored ribbon diagram of crystalline Fab′2F5, showing the heavy chain in purple, the light chain in blue and the elongated VH3 loop (colored in gold) extending from the protein surface, as generated by MOLSCRIPT (ref. 27) and Raster 3D (ref. 28);

FIG. 2 is a colored stereoplot of the ELDKWAS peptide model in density, as generated by the program 0 (ref. 29). The Fo-Fc map was calculated with the peptide omitted and contoured at 3σ. A minor break in the density at P7-Ser at the contour level illustrates the slight increase in flexibility at the extremes of the bound epitope;

FIG. 3 is a color representation of the antigen binding site of Fab′2F5, showing protein/peptide interactions, as generated using the program SETOR (ref. 30). The residues are colored by atom type: oxygen is red, nitrogen is blue, carbon is grey and sulfur is yellow. For clarity, some hydrophobic sidechains which interact with the epitope have been omitted. All bond lengths are given in Å; and

FIG. 4 is a color representation of the third hypervariable loop of the heavy chain of Fab′2F5 complex comprising amino acid residues H98 to H120, as generated using the program SETOR (ref. 30). The residues are colored by atom type.

›GENERAL DESCRIPTION OF INVENTION · 1 of 2

The crystalline structure of the Fab′ fragment of Mab 2F5 (IgG) was solved at 2.05 Å resolution by molecular replacement and adopts the standard immunoglobulin fold. A salient feature of the structure is the elongated (22 amino acids) hypervariable loop 3 of the heavy chain (V-H3, ref. 9), which comprises amino acid residues H98 to 120 and extends away from the protein surface, as can be seen from the ribbon diagram of FIG. 1 . The V-H3 loop is shown in detail in FIG. 4 . The atomic coordinates of the V-H3 loop are given in Table 3.

In the structure of the Fab′2F5 complex with bound epitope, refined at 2.0 Å, this loop is well-defined by clear electron density. In the uncomplexed form, while the V-H3 region is less clear, loops at the C-terminal regions of the heavy chain constant domain, including the C-termini of both chains, were better resolved. Conformations from the better-defined electron density were used as templates for building the other model. The refined models comprise residues L1 to L214 of the light chain and residues H1 to H146 and H151 to H235 of the heavy chain plus ordered water molecules. The amino acid sequences of the light chain (SEQ ID No.: 6) and heavy chain (SEQ ID No.: 7) of Fab′2F5 are shown in Table 1 below. For the structure of the complex, P1 to P7 are the residues of the peptide. The H147 to H150 loop of the constant domain of the heavy chain was not visible in either structure. (Residues are labelled herein H1 to H235 for the heavy chain and L1 to L214 for the light chain and P1 to P7 for the peptides).

Along with differences in mobility of the loops mentioned above, the elbow angle in the complexed form differs from uncomplexed Fab′2F5 (142° vs. 146°). Both of these observations may be artifacts of crystal packing, since the unit cells are different, uncomplexed Fab′2F5 having a unit cell which is 30% smaller. An overlay of all C α atoms results in an rmsd of 0.7 Å, but these shifts appear to be the result of a concerted domain movement (i.e. the change in elbow angle) rather than any modification of the antigen binding site. Superpositioning only the variable regions gives an rmsd of 0.4 Å. While the results of the structural analysis do not provide any obvious explanation for the long insertion in the V-H3 loop has been identified, its unusually hydrophobic nature for surface residues suggests it plays a role in the antibody mechanism. It may be involved in interactions with a portion of gp41 C-terminal to the epitope sequence, enhancing binding and increasing the specificity of the Fab. It may even form an integral part of the neutralization mechanism, perhaps by disrupting the conformation of the gp4l coiled-coil trimer.

In the complexed structure, the ELDKWAS peptide forms a slightly distorted, type I β turn, centered between P4-Lys and P5-Trp, (as seen in FIGS. 2 and 3 ), with a 3.1 Å hydrogen bond from the amide nitrogen of P6-Ala to the carbonyl oxygen of P3-Asp. The arrangement is atypical in that neither position two or three in the turn is a glycine (ref. 10), but rather the bulky residues lysine and tryptophan. The dihedral angles for P5-Trp fall in the “unfavoured” region of a Ramachandran plot (φ=−101.7°, ψ=8.7°).

Another interesting feature of the complexed structure is the stacked arrangement of the adjacent P5-Trp and P4-Lys sidechains, with hydrophobic interactions between the fully-extended alkyl chain of the P4-Lys and the aromatic rings of P5-Trp at a distance of about 3.8 Å. The lysine sidechain, whose hydrophobic methylene groups are sandwiched between P5-Trp and H54-Tyr, ends with a sharp turn at the final amino group, forming contacts with H56-Asp and H58-Asp. While the principal hydrophobic contacts of P5-Trp are the P4-Lys methylene groups, other hydrophobic residues within 4 Å of the aromatic ring system include H103-Pro and H32-Phe and the methylene groups of the sidechain of H113-Arg. A key component to the stability of the peptide configuration is the orientation of the P3-Asp sidechain, which forms strong hydrogen bonds to the backbone amide of P5-Trp as well as to L96-His-Ne and H100-Arg-NH1, all about 2.8 Å long. A water molecule associated with P5-Trp-Nβ1 at 3.0 Å also forms strong hydrogen bonds to backbone carbonyls of H33-Gly and H101-Arg at 2.7 and 2.8 Å respectively. From this analysis, it can be concluded that the Asp-Lys-Trp (DKW) trio are the essential component of the protein/peptide interaction.

This conclusion is supported by mutation studies in which changes outside the DKW core do not have a dramatic effect on binding, whereas major modifications within the trio usually prevent neutralization (ref. 5). It was estimated that the LDKW motif is 83% conserved among HIV-1 envelope glycoprotein sequence (ref. 4). For the critical portion of the epitope, DKW, conservation among 206 sequenced HIV-1 envelope proteins of all clades in the 1997 to 1998 Los Alamos HIV Sequence Database (ref. 11) is 86%. Within the B clade, conservation is 92% (91/99 sequences). Phage library screening with Mab 2F5 also selected sequences with a DRW core (ref. 4). The structure of a complex where an arginine is substituted for P4-Lys (i.e. peptide ELDRWAS (SEQ ID No: 2)) shows identical peptide conformation and contacts as the complex reported here with the consensus epitope. The total buried accessible surface area upon formation of the complex is 1025 Å 2 (calculated as the difference in accessible surface between the intact complex and the sum of the surface areas of the peptide and uncomplexed Fab′ determined using a probe of radius 1.4 Å (ref. 12)). The peptide coordinates of the complex fab′2f5+ ELDKWAS are shown in Table 4 while those for the complex fab′2f5 + ELDRWAS are shown in Table 5.

The conformation of the gp4l epitope found in the complex with Fab′2F5 and seen in detail in FIG. 3 was not anticipated. A helical conformation had been proposed (ref. 13) which was consistent with an extension of the observed coiled coil of the gp41 ectodomain (refs. 14 to 19). Most structural analyses of HIV-1 (refs. 14 to 16) or SIV (refs. 17 to 19) gp41 do not incorporate the epitope sequence, although two reports (refs. 14, 19) include a partial sequence. In one (ref. 14), ELD at the C-terminus of the crystallized portion adopted an α-helical structure, the continuation of a long (37 aa) helix. In the other, the C-terminus is an unstructured coil (ref. 19).

›GENERAL DESCRIPTION OF INVENTION · 2 of 2

A conformation of the full epitope was determined as part of a fusion protein, where it was connected to the C-terminus of glutathione-S-transferase (GST) by a nine amino acid linker (ref. 20). In this environment, the epitope formed part of a series of tight turns but not the β-turn seen in the results described herein. In the GST-fusion structure, the epitope peptide interacted with a neighboring molecule in the crystal, making it probable that crystal packing forces led to the observed conformation. The gp41 peptide portion of the structure also had high thermal parameters, denoting flexibility.

Preliminary NMR studies have suggested that the ELDKWAS sequence adopts very little or no stable secondary structure. The crystal structure of Fab′2F5 elucidated herein explains the stronger immune response observed when the epitope was introduced into loops of hemagglutinin (refs. 2, 21) or recombinant antibodies (ref. 22) where a β-turn conformation might be induced, in contrast to hepatitis B virus surface antigen (ref. 8), where epitope grafting resulted in an excellent humoral response of 2F5-like binding specificity but failed to neutralize live virus, underlining the importance of the correct epitope conformation.

The conformation of the gp41 epitope set forth herein may be adopted transiently, after assembly of the mature gp41/gp120 trimers on the virus envelope, or possibly during the fusion process. A range of conformations for gp41, including the stable fusogenic form observed in the structural determinations made herein, as well as an intermediate “unsprung” and non-fusogenic form has been proposed by several investigators (refs. 14, 23). A short life span of the antigen would be consistent with its low immunogenicity and the consequent absence of Mab 2F5 in the antisera of most infected patients. As well, passive immunization with Mab 2F5 in chimpanzees failed to neutralize HIV-1, resulting in delayed infection and lower viral loads, but not protection (ref. 6). This result was presumably due to insufficient opportunity for antibody binding, either because of low antibody concentration or the short lifetime of the antigenic conformation. As the only identified cross-neutralizing antibody against gp41, Mab 2F5 is an important focus in HIV-1 vaccine research. It is one of only three broadly neutralizing monoclonal antibodies identified to date and the only one with a short, continuous epitope. The other two known cross-neutralizing Mab′s are b12 and 2G12 which define epitopes at the CD4 binding site and V3/V4 loops of gp120 respectively (ref. 6), but in these cases the epitopes are discontinuous and involve both peptide and carbohydrate interactions (refs. 5, 6).

Development of a peptide-mimetic constrained to adopt the conformation of the gp41 sequence found in the structure of Fab′2F5 could overcome the low immunogenicity of the epitope, making such a compound a useful component of a future HIV-1 vaccine.

›EXAMPLES

The above disclosure generally describes the present invention. A more complete understanding can be obtained by reference to the following specific Examples. These Examples are described solely for purposes of illustration and are not intended to limit the scope of the invention. Changes in form and substitution of equivalents are contemplated as circumstances may suggest or render expedient. Although specific terms have been employed herein, such terms are intended in a descriptive sense and not for purposes of limitations.

Methods of molecular genetics, peptide-mimetics chemistry, protein biochemistry, crystallography and immunology used but not explicitly described in this disclosure and these Examples are amply reported in the scientific literature and are well within the ability of those skilled in the art.

›Examples4
›Example 1

This Example shows the preparation, purification and crystallization of Fab′2F5 and its epitope complex.

Intact human IAM 2F5 IgG antibody was transformed into F(ab′) 2 using standard pepsin protocols. F(ab′) 2 was then stored with 1% (w/v) clinical human albumin added to the solution for stability. To separate the protein from the albumin, DE52 cellulose was swollen in 20mM Tris pH 8.0 and packed into a column 3 cm wide, 5 cm high, providing about 30 mL bed volume. The column was washed overnight with 2 L of 20 mM Tris pH 8.0.

55 ml protein at 1.1 mg/ml concentration were dialysed against 2×4 to 5 L of 20 mM Tris pH 8.0 and the conductivity and pH of the buffer, flow through and protein concentration were checked to ensure the protein bound to the column. The protein was loaded onto the column by pumping on at 1 to 5 mL/min, with albumen binding to the column while the F(ab′)2 does not. Buffer A (20 mM Tris pH 8.0) was run through the column until the OD 280 went down to baseline and approximately 7 mL fractions were collected.

The albumin was eluted with a salt gradient of 20 mM Tris pH 8.0, 20 mM Tris pH 8.0+0.2 M NaCl, to ensure no other proteins were present. The flow-through protein was concentrated, producing 5×500 μL of F(ab′) 2 at 23 mg/ml. The sample was confirmed to be F(ab′) 2 by reducing and non-reducing native and SDS-PAGE gels as well as by a positive antigen-catch ELISA assay targetting the k-chain followed by a negative assay targetting the Fc part of a human antibody molecule. 200 μl of Fab′ at 23 mg/mL were diluted to 4 mL with 0.1 M Tris pH 8.0. 400 μL 100 mM DTT in 0.1 M Tris pH 8.0 were added to the 4 mL to provide a final concentration of 10 mM in DTT. The solution was incubated at room temperature for an hour, 30 μL of a 500 mM iodoacetamide solution in 0.1 M Tris pH 8.0 were added and the solution left for a further 30 minutes. The Fab′ was dialyzed overnight against 20 mM Tris pH 8.0 and concentrated to 10 mg/mL for use in crystallization setups.

Crystals of uncomplexed Fab′ grew from hanging drops of 5 mg/mL protein with 1.0 M ammonium sulfate at pH 5.8 as precipitant and grew as needles. Complexes were co-crystallized by adding a 3:1 ratio of peptide ELDKWAS to protein and incubating overnight before setting up as hanging drops of 5 mg/mL complex at pH 5.8, using 1.6 M ammonium sulfate at pH 7.0 as precipitant. The crystals grew in two days as large square bipyramids.

The sequence of the heavy and light variable domains has recently been published (ref. 10) and agrees with the one used in this study with a single correction at amino acid H110, which is a serine rather than a proline as originally stated. The full amino acid sequences of the variable and constant domains of the Fab′ fragment are shown in Table 1 below (SEQ ID Nos: 6 and 7).

Crystals of the free Fab′ belong to the space group P2 1 2 1 2 1 , (unit cell: a=63.6 Å; b=76.4 Å; c=94.7 Å) and grow as needles. Crystals of the complex also adopt space group P2 1 2 1 2 1 , (unit cell: a=58.0 Å; b=65.0 Å; c=175.6 Å) and grow as square bipyramids. Crystals were flash frozen for data collection. Data were collected on a Rigaku FR-C equipped with Molecular Structure Corp mirror optics and with a Mar345 image plate detector (Fab′2F5) and at the National Synchrotron Light Source in Brookhaven using a Mar30 detector (complex) . Data were processed using DENZO and SCALEPACK (HKL Research).

›Example 2

This Example describes the solution of the structure of the Fab′2F5 complexed and uncomplexed.

The structure of the Fab′2F5 complex was solved by molecular replacement (ref. 24) using PDB entry 1CLZ (ref. 25) minus sidechains and hypervariable loops as the search model. Constant and variable regions were used as independent models. The correct solution had a correlation coefficient of 35.3 (R=47.3%) using data to 3.3 Å. The CNS package (ref. 26) was used for refinement. A 2F o -F c map generated after rigid body refinement of the polyalanine model allowed placement of most sidechains. After a cycle of simulated annealing, the hypervariable loops were included. Density for the peptide was clear at this point and could be fitted unambiguously. Following another cycle of annealing, positional and B-factor refinement, waters were included where peaks of >3.5σ were found in a difference map at an appropriate distance from a donor or acceptor atom.

The structure of the uncomplexed Fab′2F5 was solved by molecular replacement using the refined Fab′2F5 complex minus peptide as the search model. Correlation coefficient was 53.7, R=39.0%. Refinement followed the same procedure as for the complex. Statistics of data collection, processing and structure refinement are given in Table 2 below. The coordinates of the crystal structures have been deposited on Apr. 9, 1999 in the Brookhaven Protein Data Bank under Accession Nos. 2F5A for the uncomplexed structure and 2F5B for the Fab′2F5-epitope complex.

›Example 3

This Example demonstrates the utility of the three-dimensional structural information of Katinger's epitope (Examples 1 and 2) in the rational design of constraint peptide-based vaccines.

Based on the structural information, the Katinger's epitope may be locked with a disulfide bridge between positions 2 and 6 in the peptide ECDKWCS (CLP-634).

The linear peptide ECDKWCS was synthesised manually, on PAM support, by using a standard Solid Phase Peptide Synthesis methodology, with a t-Boc strategy. The crude peptide was cleaved off the resin by high-HF procedure. The crude material (54 mg) was dissolved in methanol (500 mL). 50 mM iodine in methanol was added dropwise, with stirring, until solution became pale-yellow. After 1 min of stirring, Dowex IX2-200 (acetate) resin (approx. 9 g) was added. The stirring was continued until solution became colourless. The resin was filtered off, 50 ml of water was added, the mixture was concentrated in vacuo, frozen and lyophilised. The crude cyclic peptide was purified by RP-HPLC.

Based on the structural information, the Katinger's peptide also may be constrained with a lactam bond between positions 2 and 6 in the peptide EDapDKWES (CLP-1309).

The peptide: t-Boc-Glu(OBzl)-Dap(Fmoc)-Asp(OBzl)-Lys(2Cl-Cbz)-Trp(For)-Glu(OFm)-Ser(Bzl)-RESIN was assembled on a PAM solid support. Sidechains of Dap(2) and Glu(6) were subsequently deprotected by treatment with 25% piperidine. The sidechain cyclization was performed on the resin by adding four equivalents of HBTU and 8 equivalents of DIEA and shaking the mixture overnight. The cyclic peptide was cleaved off the resin by a standard HF procedure and the crude product was purified by RP-HPLC. Abbreviations used in this Example are:

Dap=diaminopropionic acid

HBTU=O-Benzotriazolyl-N,N,N′,N′-tetramethyluronium Hexafluorophosphate

DIEA=Di-isopropylethylamine

PAM=4-Hydroxymethyl-phenylacetamidomethyl resin

Bzl=Benzyl

2-Cl-Cbz=2-Chlorobenzyloxycarbonyl

For=Formyl

t-Boc=t-Butloxycarbonyl

Fmoc=Fluorenylmethoxycarbonyl

Fm=Fluorenylmethyl

Both peptides CLP-634 and CLP-1309 were found to be capable of forming an immuno-complex with monoclonal antibody 2F5 and were subsequently co-crystallized with the Fab′ fragment. These results indicated that the constrained peptides may mimic the Katinger's epitope and would be useful as peptide-based vaccines.

›Example 4

This Example demonstrates the formation of constrained peptide-carrier conjugates, for use as anti-HIV vaccines.

In order to conjugate the constrained peptide CLP-1309 (Example 3) to a carrier protein, a tetra-peptide Cys-Gly-Gly-Gly (SEQ ID No: 8) was linked to CLP-1309 at the N-terminal end and the resultant peptide was named as CLP-1491. Similarly, a tetra-peptide Gly-Gly-Gly-Cys (SEQ ID No: 9) was linked to CLP-1309 at the C-terminal end, and so the resultant peptide was named as CLP-1492. toxoid in 2 mL of 0.1 M phosphate buffer, pH 7.5). The reaction mixture was stirred for 30 min at room temperature under argon. The reaction mixture was applied to a Sephadex G-25 column (20×300 mm) equilibrated with 20 mM ammonium bicarbonate buffer, pH 7.2 and eluted with the same buffer. Elution was monitored by absorbance at 230 nm, and the eluted protein peak was pooled. The number of maleimide groups incorporated into the carrier was determined by adding excess 2-mercaptoethanol to the activated carrier-MBS and back-titrating the excess using a modified Ellman's method (ref. 31).

A general protocol for peptide-carrier conjugates has been described (ref. 32). Briefly, synthetic peptide (1 mg/mL) in degassed PBS buffer, pH 7.5 mixed with carrier-MBS (1 mg/mL) . The reaction mixture was stirred overnight at room temperature under argon atmosphere. Excess N-ethyl-maleimide (Aldrich) was added to quench the reaction, and stirring continued for an additional hour. The insoluble precipitate was filtered off, and the filtrate was subjected to gel filtration chromatography using a Sephadex G-25 column. The peptide-carrier conjugate was collected. The molar ratio of carrier to peptide was determined by using amino acid analysis.

›SUMMARY OF DISCLOSURE

In summary of this disclosure, the crystal structure of the Fab′2F5 fragment has been elucidated, both in uncomplexed form and complexed with the epitope ELDKWAS, and peptides synthesized to correspond to the constrained structure of the peptide-protein interactions. Modifications are possible within the scope of this invention.

›REFERENCES

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2. Muster, T., et al., Cross-neutralizing activity against divergent human immunodeficiency virus type 1 isolates induced by the gp41 sequence ELDKWAS. J. virology, 68, 4031-4034 (1994).

3. Purtscher, M., et al., A broadly neutralizing human monoclonal antibody against pg41 of human immunodeficiency virus type 1 (HIV-1) AIDS Res. And Human Retroviruses, 10, 1651-1658 (1994).

4. Conley, A. J., et al., Neutralization of divergent human immunodefidiciency virus type 1 varints and primary isolates by IAM-41-2F5, an anti-gp41human monoclonal antibody. Proc. Natl. Acad. Sci. USA, 91,3348-3352(1994)

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14. Weissenhorn, W., et al., Atomic structure of the ectodomain from HIV-1 gp41. Nature, 387, 426-430 (1997).

15. Tan, K., et al., Atomic structure of a thermostable subdomain of HIV-1 gp41. Proc. Natl. Acad. Sci. USA, 94, 12303-12308 (1997).

16. Chan, d., et al., Core structure of gp41 from the HIV envleope glycoprotein. Cell, 89, 263-273 (1997).

17. Malashkevich, V. N., et al., Crystal structure of the simian immunodeficiency virus (SI) gp41 core: Conserved helical interactions underlie the broad inhibitory activity of gp41 peptides, Proc. Natl. Acad. Sci. USA, 95, 9134-9139 (1998).

18. Yang, Z. N., et al., High resolution structure of simian immunodeficiency virus gp41 ectodomain, Abstracts, American Crystallographic Association Annual Meeting, 1998.

19. Caffrey, M., et al., Three-dimensional solution structure of the 44 kDa ectodomain of SIV gp41, the EMBO J., 17, 4572-4584 (1998).

20. Lim L., et al., The three-dimensional structure of glutathione-S-transferase of Schistosoma japonicum fused with a conserved neutralizing epitope of human immunodeficiency virus type 1. Protein Science, 3, 2233-2244 (1994).

21. Ernst W., et al., Baculovirus surface display: Construction and screenign of a eukaryotic epitope library, Nucl. Acids Res. 26, 1718-1723 (1998).

22. Cook, J., et al., Recombinant antibodies with conformationally constrained HIV type 1 epitope inserts elicit glycoprotein 160-specific antibody responses in vivo. AIDS Res. Human Retroviruses, 13, 449-460 (1997).

23. Chan, D. E. & Kim, P. S., HIV entry and its inhibition, Cell, 93, 681-684 (1998).

24. Navaza, J., AMoRe—an automated package for molecular replacement, Acta Crystallogr., A50, 157-163 (1994).

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31. Ridles et al., (1983), Methods Enzym. 91:49-60.

32. Chong et al., (1991), Mol. Immunol. 28: 239-245.

9

1

7

›PRT

Human immunodeficiency virus type 1

1

Glu Leu Asp Lys Trp Ala Ser

1 5

2

7

›PRT

Human immunodeficiency virus type 1

2

Glu Leu Asp Arg Trp Ala Ser

1 5

3

7

›PRT

Human immunodeficiency virus type 1

3

Glu Cys Asp Lys Trp Cys Ser

1 5

4

9

›PRT

Human immunodeficiency virus type 1

4

Glu Asp Ala Pro Asp Lys Trp Glu Ser

1 5

5

9

›PRT

Human immunodeficiency virus type 1

5

Glu Glu Asp Lys Trp Asp Ala Pro Ser

1 5

6

214

›PRT

Human immunodeficiency virus type 1

6

Ala Leu Gln Leu Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly

1 5 10 15

Asp Arg Ile Thr Ile Thr Cys Arg Ala Ser Gln Gly Val Thr Ser Ala

20 25 30

Leu Ala Trp Tyr Arg Gln Lys Pro Gly Ser Pro Pro Gln Leu Leu Ile

35 40 45

Tyr Asp Ala Ser Ser Leu Glu Ser Gly Val Pro Ser Arg Phe Ser Gly

50 55 60

Ser Gly Ser Gly Thr Glu Phe Thr Leu Thr Ile Ser Thr Leu Arg Pro

65 70 75 80

Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln Leu His Phe Tyr Pro His

85 90 95

Thr Phe Gly Gly Gly Thr Arg Val Asp Val Arg Arg Thr Val Ala Ala

100 105 110

Pro Ser Val Phe Ile Phe Pro Pro Ser Asp Glu Gln Leu Lys Ser Gly

115 120 125

Thr Ala Ser Val Val Cys Leu Leu Asn Asn Phe Tyr Pro Arg Glu Ala

130 135 140

Lys Val Gln Trp Lys Val Asp Asn Ala Leu Gln Ser Gly Asn Ser Gln

145 150 155 160

Glu Ser Val Thr Glu Gln Asp Ser Lys Asp Ser Thr Tyr Ser Leu Ser

165 170 175

Ser Thr Leu Thr Leu Ser Lys Ala Asp Tyr Glu Lys His Lys Val Tyr

180 185 190

Ala Cys Glu Val Thr His Gln Gly Leu Ser Ser Pro Val Thr Lys Ser

195 200 205

Phe Asn Arg Gly Glu Cys

210

7

462

›PRT

Human immunodeficiency virus type 1

7

Arg Ile Thr Leu Lys Glu Ser Gly Pro Pro Leu Val Lys Pro Thr Gln

1 5 10 15

Thr Leu Thr Leu Thr Cys Ser Phe Ser Gly Phe Ser Leu Ser Asp Phe

20 25 30

Gly Val Gly Val Gly Trp Ile Arg Gln Pro Pro Gly Lys Ala Leu Glu

35 40 45

Trp Leu Ala Ile Ile Tyr Ser Asp Asp Asp Lys Arg Tyr Ser Pro Ser

50 55 60

Leu Asn Thr Arg Leu Thr Ile Thr Lys Asp Thr Ser Lys Asn Gln Val

65 70 75 80

Val Leu Val Met Thr Arg Val Ser Pro Val Asp Thr Ala Thr Tyr Phe

85 90 95

Cys Ala His Arg Arg Gly Pro Thr Thr Leu Phe Gly Val Pro Ile Ala

100 105 110

Arg Gly Pro Val Asn Ala Met Asp Val Trp Gly Gln Gly Ile Thr Val

115 120 125

Thr Ile Ser Ser Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala

130 135 140

Pro Ser Ser Lys Ser Thr Ser Gly Gly Thr Ala Ala Leu Gly Cys Leu

145 150 155 160

Val Lys Asp Tyr Phe Pro Glu Pro Val Thr Val Ser Trp Asn Ser Gly

165 170 175

Ala Leu Thr Ser Gly Val His Thr Phe Pro Ala Val Leu Gln Ser Ser

180 185 190

Gly Leu Tyr Ser Leu Ser Ser Val Val Thr Val Pro Ser Ser Ser Leu

195 200 205

Gly Thr Gln Thr Tyr Ile Cys Asn Val Asn His Lys Pro Ser Asn Thr

210 215 220

Lys Val Asp Lys Lys Val Glu Pro Lys Ser Cys Asp Lys Thr His Thr

225 230 235 240

Cys Pro Pro Cys Pro Ala Pro Glu Leu Leu Gly Gly Pro Ser Val Phe

245 250 255

Leu Phe Pro Pro Lys Pro Lys Asp Thr Leu Met Ile Ser Arg Thr Pro

260 265 270

Glu Val Thr Cys Val Val Val Asp Val Ser His Glu Asp Pro Glu Val

275 280 285

Lys Phe Asn Trp Tyr Val Asp Gly Val Glu Val His Asn Ala Lys Thr

290 295 300

Lys Pro Arg Glu Glu Gln Tyr Asn Ser Thr Tyr Arg Val Val Ser Val

305 310 315 320

Leu Thr Val Leu His Gln Asp Trp Leu Asn Gly Lys Glu Tyr Lys Cys

325 330 335

Lys Val Ser Asn Lys Ala Phe Pro Ala Pro Ile Glu Lys Thr Ile Ser

340 345 350

Lys Ala Lys Gly Gln Pro Arg Glu Pro Gln Val Tyr Thr Leu Pro Pro

355 360 365

Ser Arg Asp Glu Leu Thr Lys Asn Gln Val Ser Leu Thr Cys Leu Val

370 375 380

Lys Gly Phe Tyr Pro Ser Asp Ile Ala Val Glu Trp Glu Ser Asn Gly

385 390 395 400

Gln Pro Glu Asn Asn Tyr Lys Thr Thr Pro Pro Val Leu Asp Ser Asp

405 410 415

Gly Ser Phe Phe Leu Tyr Ser Lys Leu Thr Val Asp Lys Ser Arg Trp

420 425 430

Gln Gln Gly Asn Val Phe Ser Cys Ser Val Met His Glu Ala Leu His

435 440 445

Asn His Tyr Thr Gln Lys Ser Leu Ser Leu Ser Pro Gly Lys

450 455 460

8

4

›PRT

Human immunodeficiency virus type 1

8

Cys Gly Gly Gly

1

9

4

›PRT

Human immunodeficiency virus type 1

9

Gly Gly Gly Cys

1

›Tables in the description — 4
TABLE 2 — Data Collection, Processing and Structure Refinement Parameters Compound
Crystal system;Fab′ 2F5Fab′ 2F5-ELDKWAS
space grouporthorhombic; P2 1 2 1 2 1orthorhombic; P2 1 2 1 2 1
Unit cell (Å)a = 63.6a = 58.0;
b = 76.4b = 65.0,
c = 94.7c = 175.6
Resolution range (Å)20.0-2.0512.0-2.0
# of reflections89376118126
# unique reflections2804541062
Completeness;92;90;
completeness top bin (%)9392
R sym ;7.0;3.5;
R sym top bin (%)31.316.6
σ-cutoff0.01.0
% data in test set55
# water molecules268357
in model
R, R free0.23,0.22,
0.270.25
Rmsd bonds (Å);0.007;0.010;
angles (° )1.41.5
TABLE 3
ATOM2399NALAH98−.04939.37779.6461.0021.77H
ATOM2400CAALAH981.13539.44480.4831.0021.70H
ATOM2401CBALAH982.36139.79479.6331.0021.47H
ATOM2402CALAH98.97940.46081.5981.0021.53H
ATOM2403OALAH98.22341.41981.4901.0021.06H
ATOM2404NHISH991.73140.22982.6601.0021.37H
ATOM2405CAHISH991.71941.07283.8411.0021.17H
ATOM2406CBHISH991.95640.16985.0591.0021.35H
ATOM2407CGHISH992.22940.89786.3361.0021.04H
ATOM2408CD2HISH991.39541.31687.3191.0020.90H
ATOM2409ND1HISH993.50441.22486.7461.0021.12H
ATOM2410CE1HISH993.44641.80887.9311.0020.64H
ATOM2411NE2HISH992.17941.87688.3011.0020.95H
ATOM2412CHISH992.74842.19483.7731.0021.64H
ATOM2413OHISH993.83142.02683.2071.0021.32H
ATOM2414NARGH1002.37943.35584.3061.0021.79H
ATOM2415CAARGH1003.29244.48384.3541.0022.26H
ATOM2416CBARGH1002.82445.67383.5071.0022.31H
ATOM2417CGARGH1003.88446.77283.4781.0022.62H
ATOM2418CDARGH1003.48648.02682.7121.0022.45H
ATOM2419NEARGH1004.62648.94182.6231.0022.59H
ATOM2420CZARGH1004.56950.17982.1331.0022.62H
ATOM2421NH1ARGH1003.42550.67681.6841.0022.75H
ATOM2422NH2ARGH1005.67450.91082.0551.0023.15H
ATOM2423CARGH1003.36344.90685.8051.0022.74H
ATOM2424OARGH1002.33745.12886.4601.0022.03H
ATOM2425NARGH1004.57945.00186.3041.0023.46H
ATOM2426CAARGH1004.80945.38887.6781.0024.42H
ATOM2427CBARGH1006.28745.16988.0171.0025.61H
ATOM2428CGARGH1006.55744.09989.0471.0027.15H
ATOM2429CDARGH1007.57343.06788.5721.0028.68H
ATOM2430NEARGH1008.85143.61588.1181.0029.23H
ATOM2431CZARGH1019.86742.85887.6971.0029.78H
ATOM2432NH1ARGH1019.74741.53587.6811.0030.18H
ATOM2433NH2ARGH10111.00143.41087.2761.0029.91H
ATOM2434CARGH1004.44846.84687.9021.0024.54H
ATOM2435OARGH1014.54447.66886.9961.0023.94H
ATOM2436NGLYH1024.01447.15689.1181.0025.02H
ATOM2437CAGLYH1023.70948.52989.4531.0026.02H
ATOM2438CGLYH1024.95749.05590.1361.0027.10H
ATOM2439OGLYH1025.88948.28090.3751.0026.58H
ATOM2440NPROH1035.03150.35790.4491.0027.97H
ATOM2441CDPROH1034.05751.43590.2151.0028.46H
ATOM2442CAPROH1036.21850.90191.1111.0029.02H
ATOM2443CBPROH1035.86352.37991.2691.0028.75H
ATOM2444CGPROH1034.98252.63090.0561.0028.56H
ATOM2445CPROH1036.45850.22692.4571.0030.21H
ATOM2446OPROH1035.51549.92793.1851.0030.26H
ATOM2447NTHRH1047.72349.96792.7721.0031.28H
ATOM2448CATHRH1048.07349.36094.0481.0032.89H
ATOM2449CBTHRH1049.58649.04294.1151.0032.77H
ATOM2450OG1THRH1049.89848.01493.167l.0033.00H
ATOM2451CG2THRH1049.98748.57995.5141.0032.60H
ATOM2452CTHRH1047.72050.36695.1411.0033.71H
ATOM2453OTHRH1047.97851.55994.9941.0033.67H
ATOM2454NTHRH1057.12349.88996.2251.0035.02H
ATOM2455CATHRH1056.74550.76997.3211.0036.43H
ATOM2456CBTHRH1055.21750.72397.5891.0036.53H
ATOM2457OG1THRH1054.83749.39997.9901.0036.95H
ATOM2458CG2THRH1054.43751.11696.3341.0036.64H
ATOM2459CTHRH1057.47050.38498.6091.0037.35H
ATOM2460OTHRH1057.89249.24298.7731.0037.48H
ATOM2461NLEUH1067.62551.35499.5061.0038.42H
ATOM2462CALEUH1068.26451.132100.8041.0039.62H
ATOM2463CBLEUH1069.63351.813100.8771.0039.53H
ATOM2464CGLEUH10610.38551.596102.1991.0039.63H
ATOM2465CD1LEUH10610.64350.107102.3961.0039.65H
ATOM2466CD2LEUH10611.69452.362102.1931.0039.35H
ATOM2467CLEUH1067.31951.756101.8251.0040.38H
ATOM2468OLEUH1067.11352.973101.8281.0040.43H
ATOM2469NPHEH1076.75350.916102.6871.0041.38H
ATOM2470CAPHEH1075.78451.366103.6791.0042.27H
ATOM2471CBPHEH1076.44352.208104.7741.0043.05H
ATOM2472CGPHEH1077.52251.488105.5251.0043.75H
ATOM2473CD1PHEH1078.85551.624105.1551.0044.10H
ATOM2474CD2PHEH1077.20250.645106.5851.0044.17H
ATOM2475CE1PHEH1079.85750.935105.8291.0044.32H
ATOM2476CE2PHEH1078.19549.948107.2651.0044.42H
ATOM2477CZPHEH1079.52750.094106.8871.0044.38H
ATOM2478CPHEH1074.73652.194102.9461.0042.37H
ATOM2479OPHEH1074.35553.276103.3901.0042.68H
ATOM2480NGLYH1084.29851.681101.7991.0042.27H
ATOM2481CAGLYH1083.29052.368101.0151.0042.09H
ATOM2482CGLYH1083.77753.434100.0511.0041.71H
ATOM2483OGLYH1083.06553.78299.1121.0042.19H
ATOM2484NVALH1094.97953.957100.2601.0040.92H
ATOM2485CAVALH1095.49154.99699.3731.0040.10H
ATOM2486CBVALH1096.40655.988100.1381.0040.30H
ATOM2487CG1VALH1096.86857.09799.2091.0040.21H
ATOM2488CG2VALH1095.66756.568101.3301.0040.54H
ATOM2489CVALH1096.27554.44198.1841.0039.35H
ATOM2490OVALH1097.22653.67898.3531.0039.16H
ATOM2491NPROH1105.86754.80596.9561.0038.61H
ATOM2492CDPROH1104.72855.65496.5691.0038.51H
ATOM2493CAPROH1106.56754.32995.7571.0037.67H
ATOM2494CBPROH1105.72854.92294.6291.0037.96H
ATOM2495CGPROH1105.22156.21495.2581.0038.42H
ATOM2496CPROH1107.98854.88795.7821.0036.69H
ATOM2497OPROH1108.17956.09995.9211.0036.53H
ATOM2498NILEH1118.97754.00695.6541.0035.32H
ATOM2499CAILEH11110.37754.41995.6921.0034.04H
ATOM2500CBILEH11111.08753.83496.9271.0034.06H
ATOM2501CG2ILEH11110.44154.36198.2041.0034.21H
ATOM2502CC1ILEH11111.01752.30596.8761.0034.03H
ATOM2503CD1ILEH11111.77651.60797.9901.0033.88H
ATOM2504CILEH11111.18054.00994.4631.0033.02H
ATOM2505OILEH11112.36754.32294.3651.0032.88H
ATOM2506NALAH11210.55153.29693.5361.0031.79H
ATOM2507CAALAH11211.25552.86292.3381.0030.94H
ATOM2508CBALAH11212.14951.67092.6671.0030.98H
ATOM2509CALAH11210.30052.49691.2131.0030.17H
ATOM2510OALAH1129.39451.68191.3981.0030.19H
ATOM2511NARGH11310.50653.09190.0461.0029.21H
ATOM2512CAARGH1139.65152.79788.9051.0028.40H
ATOM2513CBARGH1139.19954.10088.2391.0028.78H
ATOM2514CGARGH11310.33755.00987.8531.0028.97H
ATOM2515CDARGH1139.85056.25887.1321.0029.05H
ATOM2516NEARGH11310.97157.13186.8211.0029.19H
ATOM2517CZARGH11310.94058.10485.9161.0029.34H
ATOM2518NH1ARGH1139.83158.33985.2171.0028.91H
ATOM2519NH2ARGH11312.02958.83555.7021.0029.05H
ATOM2520CARGH11310.35351.90187.5921.0027.85H
ATOM2521OARGH1139.74651.46256.9201.0027.45H
ATOM2522NGLYH11411.63251.62088.1221.0027.08H
ATOM2523CAGLYH11412.36750.76887.2031.0026.56H
ATOM2524CGLYH11411.65549.45686.8971.0026.06H
ATOM2525OGLYH11411.58849.03685.7381.0025.97H
ATOM2526NPROH11511.13248.76387.9181.0025.66H
ATOM2527CDPROH11511.21249.04189.3621.0025.99H
ATOM2528CAPROH11510.43247.49787.7001.0025.02H
ATOM2529CBPROH11510.02847.08789.1191.0025.85H
ATOM2530CGPROH1159.92148.43589.8381.0026.45H
ATOM2531CPROH1159.23947.53486.7341.0024.10H
ATOM2532OPROH1158.80846.49586.2521.0023.75H
ATOM2533NVALH1168.70048.71086.4461.0022.92H
ATOM2534CAVALH1167.56548.76485.5311.0022.26H
ATOM2535CBVALH1166.73050.06285.7191.0021.84H
ATOM2536CG1VALH1166.40150.26687.1991.0021.48H
ATOM2537CG2VALH1167.47251.25585.1501.0020.99H
ATOM2538CVALH1168.02248.69684.0661.0022.08H
ATOM2539OVALH1167.19848.51383.1661.0022.38H
ATOM2540NASNH1179.32748.82483.8261.0021.63H
ATOM2541CAASNH1179.82648.81382.4551.0021.64H
ATOM2542CBASNH11711.07149.69782.3381.0021.90H
ATOM2543CGASNH11710.74851.17382.5261.0022.54H
ATOM2544OD1ASNH1179.68651.63082.1161.0022.65H
ATOM2545ND2ASNH11711.67351.92283.1151.0022.26H
ATOM2546CASNH11710.07047.45181.8141.0021.39H
ATOM2547OASNH11711.18647.12281.3961.0021.27H
ATOM2548NALAH1188.98446.69181.7161.0021.30H
ATOM2549CAALAH1188.96445.36481.1231.0021.19H
ATOM2550CBALAH11810.09344.51181.6951.0021.58H
ATOM2551CALAH1187.63244.71381.4661.0021.25H
ATOM2552OALAH1186.89845.19782.3331.0021.59H
ATOM2553NMETH1197.32943.63080.7591.0021.14H
ATOM2554CAMETH1196.15342.81481.0121.0021.00H
ATOM2555CBMETH1195.41342.48679.7121.0021.35H
ATOM2556CGMETH1194.78243.69179.0041.0021.59H
ATOM2557SDMETH1193.73844.76780.0531.0022.00H
ATOM2558CEMETH1194.88045.83680.6811.0024.35H
ATOM2559CMETH1196.90741.59481.5421.0021.33H
ATOM2560OMETH1197.49940.82980.7731.0021.24H
ATOM2561NASPH1206.89441.43082.8581.0021.43H
ATOM2562CAASPH1207.67940.38183.5001.0021.62H
ATOM2563CBASPH1208.01440.81984.9321.0021.73H
ATOM2564CGASPH1206.80640.82685.8401.0022.35H
ATOM2565OD1ASPH1205.66140.87885.3301.0021.92H
ATOM2566OD2ASPH1207.01140.80787.0751.0021.94H
ATOM2567CASPH1207.20938.93183.4991.0021.67H
ATOM2568OASPH1208.02038.02783.6881.0021.12H
TABLE 4 — ELDKWAS
ATOM3373CBGLUP1.16960.11175.3041.0029.50P
ATOM3374CGGLUP1−.45058.93576.0691.0030.79P
ATOM3375CDGLUP1−1.15157.91775.1851.0031.68P
ATOM3376OE1GLUP1−.57157.47774.1721.0032.86P
ATOM3377OE2GLUP12.28857.53075.5191.0031.76P
ATOM3378CGLUP12.44259.06575.4751.0027.76P
ATOM3379OGLUP12.77757.90275.2301.0027.40P
ATOM3380NGLUP11.20158.96473.3471.0028.40P
ATOM3381CAGLUP11.47359.80274.5491.0028.51P
ATOM3382NGLUP22.88259.73976.5371.0027.14P
ATOM3383CAGLUP23.82559.15677.4971.0026.40P
ATOM3384CBGLUP24.34360.23578.4621.0026.88P
ATOM3385CGGLUP25.26461.32977.9131.0027.33P
ATOM3386CD1GLUP25.47362.40678.9811.0027.63P
ATOM3387CD2GLUP26.59060.72077.4911.0027.68P
ATOM3388CGLUP23.23958.00878.3171.0025.81P
ATOM3389OGLUP22.04958.00078.6251.0025.51P
ATOM3390NGLUP34.08957.04778.6761.0024.98P
ATOM3391CAASPP33.67655.89879.4801.0024.32P
ATOM3392CBASPP34.87354.97379.7331.0023.70P
ATOM3393CGASPP34.53153.80380.6421.0023.27P
ATOM3394OD1ASPP33.59553.04080.3021.0022.76P
ATOM3395OD2ASPP35.19153.64381.6931.0021.86P
ATOM3396CASPP33.10956.35680.8241.0024.44P
ATOM3397OASPP33.35157.48481.2631.0024.24P
ATOM3398NASPP42.38055.46681.4891.0024.58P
ATOM3399CALYSP41.78455.77882.7841.0025.00P
ATOM3400CBLYSP41.07954.54383.3501.0024.68P
ATOM3401CGLYSP4.24754.77984.6131.0024.80P
ATOM3402CDLYSP4−.45453.48585.0371.0024.50P
ATOM3403CELYSP4−1.50853.72386.1331.0024.83P
ATOM3404NZLYSP4−2.57254.67185.6781.0024.26P
ATOM3405CLYSP42.81656.25383.8061.0025.53P
ATOM3406OLYSP42.52857.12484.6221.0025.08P
ATOM3407NTRPP54.02055.69383.7531.0025.97P
ATOM3408CATRPP55.03056.04684.7431.0027.09P
ATOM3409CBTRPP55.63954.75685.3071.0026.62P
ATOM3410CGTRPP54.58053.75485.6841.0026.36P
ATOM3411CD2TRPP53.64653.86386.7661.0026.15P
ATOM3412CE2TRPP52.77452.75286.6821.0025.96P
ATOM3413CE3TRPP53.46154.79587.7981.0026.24P
ATOM3414CD1TRPP54.24752.60785.0061.0026.28P
ATOM3415NE1TRPP53.16452.00385.6021.0025.88P
ATOM3416CZ2TRPP51.72852.54587.5951.0025.85P
ATOM3417CZ3TRPP52.41554.59388.7061.0026.20P
ATOM3418CH2TRPP51.56453.47788.5971.0025.91P
ATOM3419CTRPP56.13756.99584.2801.0027.96P
ATOM3420OTRPP57.12357.18284.9851.0027.77P
ATOM3421NALAP65.96757.59883.1071.0029.24P
ATOM3422CAALAP66.95758.53482.5711.0030.79P
ATOM3423CBALAP66.73858.73381.0771.0030.55P
ATOM3424CALAP66.91959.89083.2771.0032.11P
ATOM3425OALAP65.90460.27383.8481.0032.54P
ATOM3426NSERP78.04060.60183.2131.0033.55P
ATOM3427CASERP78.20661.92383.8121.0035.02P
ATOM3428CBSERP77.00762.82183.4811.0035.56P
ATOM3429OGSERP76.92263.05882.0851.0036.31P
ATOM3430CSERP78.38861.86885.3171.0035.70P
ATOM3431OSERP79.55561.94585.7721.0035.92P
ATOM3432OTSERP77.35761.72486.0131.0036.58P
TABLE 5 — ELDRWAS
ATOM3265CBGLUP1.00159.85275.7961.0071.00P
ATOM3266CGGLUP1−.47958.56276.4621.0071.58P
ATOM3267CDGLUP1−1.14457.60975.4941.0071.95P
ATOM3268OE1GLUP1−.55457.31174.4311.0072.48P
ATOM3269OE2GLUP1−2.26057.13475.8031.0071.87P
ATOM3270CGLUP12.32658.99075.7601.0036.82P
ATOM3271OGLUP12.71757.86775.4361.0036.76P
ATOM3272NGLUP1.98559.00973.6621.0037.23P
ATOM3273CAGLUP11.27059.72074.9411.0037.14P
ATOM3274NLEUP22.77559.62776.8331.0033.88P
ATOM3275CALEUP23.78359.03477.7021.0033.45P
ATOM3276CBLEUP24.38960.11478.6111.0061.37P
ATOM3277CGLEUP25.31661.18178.0001.0061.47P
ATOM3278CD1LEUP25.50662.34678.9781.0061.51P
ATOM3279CD2LEUP26.65960.54077.6421.0061.59P
ATOM3280CLEUP23.24957.87678.5681.0033.17P
ATOM3281OLEUP22.14057.93779.1091.0032.99P
ATOM3282NASPP34.05456.82178.6841.0036.78P
ATOM3283CAASPP33.70055.66679.4961.0036.51P
ATOM3284CBASPP34.89254.72779.6641.0027.42P
ATOM3285CGASPP34.58353.56980.5971.0027.10P
ATOM3286OD1ASPP33.67652.77880.2581.0026.93P
ATOM3287OD2ASPP35.23553.46081.6681.0026.53P
ATOM3288CASPP33.28556.15580.8681.0036.57P
ATOM3289OASPP33.59557.28081.2451.0036.49P
ATOM3290NARGP42.62855.28881.6291.0047.13P
ATOM3291CAARGP42.15055.63982.9571.0047.37P
ATOM3292CBARGP41.30954.49583.5161.0057.30P
ATOM3293CGARGP4.54554.86584.7641.0057.28P
ATOM3294CDARGP4−.20153.67885.3511.0057.26P
ATOM3295NEARGP4−1.06654.11586.4361.0050.30P
ATOM3296CZARGP4−1.73653.30987.2561.0050.30P
ATOM3297NH1ARGP4−1.64651.99487.1181.0050.30P
ATOM3298NH2ARGP4−2.49553.82288.2271.0050.30P
ATOM3299CARGP43.23856.01483.9711.0047.65P
ATOM3300OARGP43.01656.86184.8401.0047.39P
ATOM3301NTRPP54.41255.40283.8731.0041.46P
ATOM3302CATRPP55.46055.72484.8291.0041.97P
ATOM3303CBTRPP56.03954.43185.3871.0045.39P
ATOM3304CGTRPP54.98153.41585.7441.0045.32P
ATOM3305CD2TRPP54.09253.45486.8701.0045.24P
ATOM3306CE2TRPP53.25752.31986.7811.0045.24P
ATOM3307CE3TRPP53.92054.34087.9481.0045.31P
ATOM3308CD1TRPP54.65552.29285.0411.0045.27P
ATOM3309NE1TRPP53.62351.62785.6571.0045.13P
ATOM3310CZ2TRPP52.26652.04487.7241.0045.22P
ATOM3311CZ3TRPP52.93154.06488.8911.0045.30P
ATOM3312CH2TRPP52.11752.92488.7691.0045.34P
ATOM3313CTRPP56.58256.61884.2641.0042.36P
ATOM3314OTRPP57.66956.69584.8341.0042.32P
ATOM3315NALAP66.29657.30583.1571.0047.84P
ATOM3316CAALAP67.26758.19282.5121.0048.51P
ATOM3317CBALAP66.97758.28681.0261.0039.87P
ATOM3318CALAP67.29059.59783.1171.0049.00P
ATOM3319OALAP66.37260.00083.8381.0049.16P
ATOM3320NSERP78.34960.33682.7951.0052.63P
ATOM3321CASERP78.55161.70083.2821.0053.25P
ATOM3322CPSERP77.28362.53183.0641.0091.37P
ATOM3323OGSERP77.46463.85483.5411.0091.74P
ATOM3324CSERP78.93761.72784.7651.0053.52P
ATOM3325OSERP710.15361.80855.0621.0053.79P
ATOM3326OTSERP78.02661.63785.6171.0092.11P

Claims as granted

11 claims

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Classifications

6 codes
IPC · International Patent Classification
Section C — Chemistry; metallurgy
  • C07K19/00
  • C07K7/06
  • C12P21/08
  • C07K14/16
  • C07K16/10
USPC · US Patent Classification
530/387.9

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⤢ drag to zoomJul 1999Jan 2000Jul 2000Jan 2001Jul 2001Jan 2002Jul 2002Jan 2003USPTOApplicantRestriction requirementResponse after non-final
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3.6 y
1,316 days filing → grant
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no RCE
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Examiner
Mary E. Mosher
art unit 1648 · TC 1600
Citations: 41 back · 1 forward

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