The present invention relates to the gene CYP76B1 of a cytochrome P450 which has been isolated from Helianthus tuberosus tuber. The expression of this gene in yeast has shown that it encoded an enzyme very actively catalysing the O-dealkylation of various exogenous molecules with a high efficiency, such as phenylureas. The expression of CYP76B1 is strongly induced in plants brought into contact with certain exogenous metals or organic compounds. This induction may be exploited for the detection of environmental pollutants. CYP76B1 can be also used to alter the resistance of plants sensitive to this family of herbicides and for soil and groundwater bioremedation.

Description

53 parts

›This application claims priority to U.S. Provisional Application…

This application claims priority to U.S. Provisional Application Ser. No. 60/054,351, filed Jul. 31, 1997.

›BACKGROUND OF THE INVENTION · 1 of 4

The gene CYP76B1 of a cytochrome P450 has been isolated from Helianthus tuberosus tuber. The expression of this gene in yeast has shown that it encoded an enzyme very actively catalyzing the O-dealkylation of various exogenous molecules with a high efficiency. It could, for this reason, be used as oxygenase, as biocatalyst either for the degradation of environmental pollutants or for the biosynthesis of organic compounds such as medicaments, perfumes or pigments.

The expression of CYP76B1 is strongly induced in plants brought into contact with certain exogenous metals or organic compounds. This induction may be exploited for the detection of environmental pollutants.

CYP76B1 metabolizes with high efficiency a wide range of xenobiotics, including alkoxycoumarins, alkoxyresofurins and several herbicides of the class of phenylureas. CYP76B1 also catalyzes the mono- and didealkylation of phenylureas such as the two herbicides chlortoluron and isoproturon, with turnover rates comparable to those reported for physiological substrates and produces non-phytotoxic compounds. CYP76B1 can therefore be used to alter the resistance of plants sensitive to this family of herbicides and for soil and groundwater bioremediation.

1. Field of Invention

The present invention relates to purified polypeptides and DNA sequences of CYP76B1, a cytochrome P450 molecule, which has been isolated from Helianthus tuberosus tuber, and a method for preparing the same. It further relates to methods for detecting environmental chemical pollution comprising determining the presence of CYP76B1 polypeptide. It furthermore relates to methods for producing transgenic plants incorporating a gene or a gene fragment CYP76B1 in a bioremediation perspective and for an agricultural use.

2. Description of the Related Art

Plants respond to environmental stress with a wide range of adaptative changes, including the induction of defense mechanisms. Plants defense against the attack from pathogens and predators, or against changes in environmental conditions like drought, salinity, increased UV light or extreme temperatures have been largely documented. Much less is known about plant response to chemical agression. Increasing amounts of pesticides and other industrial chemicals are introduced in the environment without real knowledge of their impact on plant metabolism, development and organoleptic properties. Evidence has been obtained that plant can accumulate, transform and store exogenous chemicals as conjugated, compartmented or bound residues (2, 3). The enzymatic equipment allowing plants to cope with the toxicity of xenobiotics is very similar to the enzymes involved in the metabolism of drugs in the liver of mammals (4, 5, 6, 7). It includes reductive, oxidative and hydrolytic enzymes, various transferases for the formation of conjugated metabolites, and systems for the regeneration of antioxidants like glutathione. The cytochrome P450s constitute one of the principal classes of enzymes responsible for this metabolism (12, 7). A characteristic common to both animal and plant enzymes is their inducibility by drugs and other exogenous toxins.

As in animals, cytochromes P450 form, in plants, the main class of oxidases involved in the metabolism of exogenous molecules, including herbicides and pollutants (8, 9, 10, 11, 12). They have been shown to catalyze hydroxylation, S-oxidation, N- or O-dealkylation of environmental chemicals, thereby increasing their hydrophylicity and allowing their subsequent conjugation or immobilization. Increased P450 content and enzymatic activities following treatment with metals or organic molecules including drugs, herbicides, herbicide safeners, solvents and industrial pollutants have been observed in many plant species (1, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22). The induction of certain cytochrome P450s and of their enzymatic activities is currently used as an early marker of chemical pollution in marine environments in particular (46, 47, 26). Studies, which are very preliminary, have suggested that an induction of P450s may be detected in a polluted environment (47). In the case of the cinnamate 4-hydroxylase (C4H), increase in catalytic activity induced by chemicals was paralleled by an increase in the steady-state level of CYP73A1 transcripts (22).

7-Ethoxycoumarin is a synthetic fluorescent molecule, very similar to natural coumarins, widely used to assay the catalytic activity of cytochromes P450 involved in the metabolism of foreign compounds (23, 24). Increase in 7-10 ethoxycoumarin O-deethylase (ECOD) activity, fast and easy to measure, has often been taken as an index of the induction of these P450s in animals following environmental chemical stress (25, 26). P450-dependent ECOD activity was detected in several plant species (27, 28, 29). In both dicots and monocots, the activity was found strongly induced in response to exogenous chemicals (1, 27, 29). A more detailed analysis, performed on Helianthus tuberosus tuber, showed that the induction of ECOD activity was often several fold higher than that of a physiological activity like C4H (22). ECOD thus appeared as a good potential marker of chemical contamination. Fluorescence assay of ECOD activity is impossible in extracts from green plants (interference with chlorophyll).

Because of the enormous losses caused by indesirable plant growth, the problem of weed control is a major one in the agricultural economy. Herbicides are broadly used for controlling the growth of weeds in crops. Among herbicides, compounds show broad spectrum control, making them useful where complete eradication of vegetation is needed, and others show selective control with tolerance to agronomic crops. New methods for producing transgenic plants resistant to herbicides have been developed (EP 730030). These transgenic plants are transformed and generally express or overexpress an enzyme capable of detoxifying the chosen herbicide, making them resistant to that herbicide.

›BACKGROUND OF THE INVENTION · 2 of 4

Among the herbicides or pesticides which have been developed, many of them are substitued urea or thiourea compounds, represented by the formula: R1R2N—CO—NR3R4 or R1R2N—CS—NR3R4, and are used for destruction and prevention of weeds (WO 90/06680; WO 95/22547; U.S. Pat. Nos. 2,655,444; 2,655,447; 2,857,430; 3,912,496; 5,393,733; 5,512,535 FR 69 03 235; FR 71 06 517).

Most of these substituted urea or thiourea compounds have cyclic groups and amine radicals, which can be substituted with alkoxy radicals and/or alkyl radicals. Among them, the phenylurea class which can be represented by the formula: (substituted-phenyl)—NH—CO—NR1R2, in which the phenyl group and the secondary amine radical can be substituted with alkoxy and/or alkyl radicals. This phenylurea class can be illustrated by chlortoluron (N-(3-chloro-p-tolyl)-N′,N′-dimethylurea) and by isoproturon (N-(4-isopropylphenyl)-N′,N′-dimethylurea).

The first coding sequence of plant P450 (CYP73A1) capable of metabolizing an herbicide (i.e. capable of hydroxylating chlortoluron) has been isolated in the laboratory (33). The reaction turnover is however too low (0.014 min −1 ) for the enzyme to be capable of substantially increasing the resistance of plants to chlortoluron.

It has, moreover, been demonstrated that the resistance of plants to herbicides (chlortoluron* and chlorsulfuron) could be manipulated (increased or decreased) by genetic transformation using animal or bacterial P450 genes (48, 49, 50). No experiment of this type has been carried out up until now with plant genes. The work carried out with bacterial and animal genes strongly suggests, however, that it is possible to transfer the tolerance to herbicides from one plant to another.

The advantage of using plant genes is two-fold: i) the efficiency of the biotransformation with the plant P450 appears to be substantially greater than that obtained with the animal P450s tested, ii) the transformation of plants with plant genes is accepted better by public opinion.

The present invention is directed to purified CYP76B1 polypeptide and its biologically active fragments.

The invention further relates to nucleic acids fragments encoding the polypeptide or its biologically active fragments and specific oligonucleotides probes or primers which are obtained from these sequences.

A further object of the invention is to provide cloning and/or expression vectors comprising at least one of the said nuleic acid sequence, and host cells transformed with such cloning and/or expression vectors under conditions allowing the replication or/and the expression of said nucleic acid sequences. In another aspect, this invention provides methods for producing CYP76B1 recombinant polypeptides or their biologically active fragments by transformed host cells.

The invention is also directed to monoclonal and polyclonal antibodies or their fragments which are specific for the polypeptide defined above.

The invention further comprises methods for detecting abnormal expression or overexpression of the said polypeptide in biological plant samples comprising determining the accumulation of CYP76B1 polypeptides in accordance with immunological techniques or evaluating the accumulation of CYP76B1 mRNA transcripts accumulation in accordance with molecular hybridization techniques. The use of these methods for detecting environmental chemical pollution is also an aspect of this invention.

According to a further aspect, the invention relates to a method for producing organic compounds which are obtained by organic substrates biotransformation using the CYP76B1 oxygenase activities and a method for selecting organic compounds capable of being biotransformed by the polypeptides.

The present invention also concerns a method for screening organic compounds capable of being biotransformed by the CYP76B1 polypeptides oxygenase activities, especially for selecting herbicides or pesticides.

Furthermore the invention relates to a method for screening plant cells or plants which are resistant to a given herbicide or pesticide comprising transforming a plant cell or plant with a vector of the invention, testing the plant cell or plant for its ability to grow in the presence of normally inhibitory concentration of said herbicide or pesticide and selecting the plant cells or the plants which are resistant to the herbicide or to the pesticide.

The invention also comprises a transgenic plant having increased resistance to herbicides or pesticides wherein said plant is transformed by a vector according to the invention.

The invention finally relates to a method for the bioremediation comprising transgenic plants which express or overexpress the CYP76B1 gene.

The object of the present invention relates to a purified polypeptide which comprises an amino acid sequence selected from:

a) the amino acid sequence SEQ ID NO 1,

b) the amino acid sequence SEQ ID NO 2,

c) a fragment of the amino acid sequence SEQ ID NO 1 or SEQ ID NO 2 which retains at least one of their biological activities,

d) an amino acid sequence of a CYP76B1 polypeptide analogue.

In the description the following definitions are used:

CYP76B1 polypeptide or CYP76B1 protein: a polypeptide having amino acid sequence comprising all or part of the CYP76B1 or E3C amino acid sequences, respectively sequence SEQ ID NO 1 and sequence SEQ ID NO 2, or one of their fragments or derived fragments which are biologically active.

CYP76B1 analogue: a polypeptide or molecule which results from a genetic or chemical modification such as mutation, deletion, addition, substitution and/or chemical modification of at least one amino acid of the CYP76B1 polypeptide sequence, said polypeptide retaining at least one of the CYP76B1 polypeptide biological activities.

Biologically active: capable of providing enzymatic activity, especially oxygenase activities, and/or capable of being recognized by CYP76B1 polypeptide specific antibodies and/or capable of inducing antibodies which recognize these polypeptides.

Among the polypeptides of the invention, the polypeptide which has the amino acid SEQ ID NO 1 or SEQ ID NO 2, is preferred.

›BACKGROUND OF THE INVENTION · 3 of 4

The invention further relates to a DNA sequence isolated encoding a polypeptide according to the invention.

In a preferred embodiment the invention relates to DNA sequence selected from:

a) DNA sequence SEQ ID NO 1,

b) DNA sequence SEQ ID NO 2,

c) a DNA sequence capable of specifically hybridizing with DNA sequence SEQ ID NO 1 or DNA sequence SEQ ID NO 2, or with their complementary sequence or their corresponding mRNA sequence,

d) a DNA sequence encoding a CYP76B1 analogue.

In a more preferred embodiment the invention comprises DNA sequence isolated of gene which encodes CYP76B1 or E3C polypeptide.

The different nucleic acid fragments of the invention can be obtained by screening cDNA or genomic DNA librairies using probes prepared from a DNA sequence encoding the CYP76B1 polypeptide. Such cDNA or genomic DNA libraries can be screened by standard molecular biological techniques. Oligonucleotide probes or primers which are capable of strongly and specifically hybridizing with any of the DNA sequences according to the invention, are included in the invention.

Oligonucleotides probes, primers or CYP76B1 polypeptides can also be obtained by chemical synthesis, and are included in the invention.

Preferably the probes or the primers according to the invention comprise at least 10 nucleotides and can be as long as the full-length sequence is encoding the CYP76B1 polypeptide. Among the shortest probes which contain about 10 to 20 nucleotides, the suitable conditions for hybridization correspond to stringent conditions which are normally used in standard methods, described for example in the experimental procedure. Preferentially the probes according to the invention are preliminary labeled before use, for example radio-labeled, chemiluminescent-labeled, fluorescent-labeled or enzyme-linked probes.

The present invention also comprises oligonucleotides primers which specifically hybridize with one of the DNA sequences according to the invention or which comprise the DNA sequence encoding one of the polypeptides and allows the amplification of the sequence by the PCR method or by one of its variants. Advantagously the oligonucleotide probes or primers comprise a sequence selected from:

a) sequence SEQ ID NO 3: 5′-ATATATGGATCCATGGATTTTCTTATAATAGTGAGTAC (sense),

b) sequence SEQ ID NO 4: 5′-TATATAGAATTCATGCTAGTTCAATGGTATTGGAACAACAC (reverse).

The DNA sequence according to the invention can be used for the preparation of CPY76B1 polypeptides or analogues. Such recombinant polypeptides can be produced by standard recombinant DNA techniques. Effective production system of recombinant polypeptides requires to have at one's disposal a vector, i.e. plasmid or viral origin, and a compatible host cell. The vector comprises, at least a DNA sequence according to the invention under the control of element expression in the host cell. The host cell can be chosen among procaryote systems, such as bacteria, eucaryote systems, such as yeasts, in particular Saccharomyces cerevisiae, or plant cells, or any system which is advantageously available. Such vectors can be prepared in accordance with standard techniques, and the resulting clones can be introduced in the appropriate host cell by using well known methods such as electroporation.

The present invention comprises a vector for the cloning or/and the expression of a polypeptide according to the invention, containing a DNA sequence according to the invention.

In a preferred embodiment the vector is a plasmid vector.

The cells can be prepared by introducing a nucleotide sequence inserted in a vector, as defined above, into the host cells then these cells are cultured under conditions allowing the replication or/and the expression of transfected nucleic acid fragment. The invention also comprises host cell transformed by a vector according to the invention. Preferably the cell is Saccharomyces cerevisiae or a plant cell.

This invention further comprises methods for the production of a polypeptide comprising culturing cells according to the invention under conditions allowing the expression of polypeptide and recovering the said polypeptide from the culture medium. The polypeptide obtained by these methods, are also included in the invention.

The monoclonal or polyclonal antibodies or their fragments, labeled antibodies which specifically bind to a polypeptide according to the invention, are included in the invention.

Polyclonal antibodies can be prepared using standard methods from an animal which has been immunized against CYP76B1 polypeptide, produced for example by genetic recombination. Monoclonal antibodies can be prepared according to the standard method for culturing hybridomas described by Köhler and Milstein (Nature 1975). Antibodies according to the invention or their fragments, such as Fab or F(ab′)2 fragments, can be labeled or immuno-conjugated. The invention comprises a method for the purification or the detection of a polypeptide according to the invention comprising using an antibody according to the invention. Biochemical pollution marker comprising an antibody or an oligonucleotide probe according to the invention are also included in the invention.

The invention furthermore comprises method for detecting abnormal expression or overexpression of polypeptides according to the invention from a biological plant sample comprising bringing said sample into contact with an antibody according to the invention under conditions allowing the formation of an immunological complex between said polypeptides and said antibody, and detecting the formation of an immunological complex.

The invention also comprises a method for detecting abnormal expression or overexpression of polypeptides according to the invention from a biological plant sample comprising bringing said sample into contact with an oligonucleotide probe according to the invention under conditions allowing the formation of an hybridization complex between said oligonucleotide probe and an mRNA sequence encoding said polypeptide, and detecting the formation of an hybridization complex.

›BACKGROUND OF THE INVENTION · 4 of 4

These methods more especially allow the detection of abnormal accumulation of CYP76B1 polypeptides or their mRNA transcripts in a biological sample, abnormal accumulation which is induced by metals or organic compounds. More generally, antibodies and probes according to this invention can advantageously be used in any situation where expression or overexpression of CYP76B1 polypeptides must be examined. The invention also comprises the use of these methods for detecting environmental chemical pollution.

The expression of the CYP76B1 polypeptide in yeast has shown that it encoded an enzyme very actively catalyzing the dealkylation of exogenous substrates such as alkoxycoumarin, alkoxyresorufin or phenylurea herbicides. The CYP76B1 polypeptide oxygenase activities can therefore be used for biosynthetizing organic compounds such as medicaments, perfumes or pigments. This invention comprises method for biosynthetizing organic compound comprising bringing an organic substrate of the polypeptide according to the invention into contact with said polypeptide under conditions allowing the synthesis of said organic compound by biotransformation of the substrate, and recovering said organic compound.

CYP76B1 polypeptide very actively catalyzes the O-dealkylation of various exogenous compounds and the mono- and didealkylation of herbicides of the phenylurea family, such as chlortoluron or isoproturon. CYP76B1 polypeptide very effectively attacks the N-dimethyl group which it oxidizes into an amine. All the phenylureas, and numerous other pesticides, carry this functional group and are therefore potential substrates of CYP76B1 polypeptide. Such a metabolism abolishes the phytotoxicity of these herbicides or pesticides.

›SUMMARY OF THE INVENTION

This invention comprises a method for screening organic compounds capable of being biotransformed by a polypeptide according to the invention comprising bringing said organic compounds into contact with said polypeptide under conditions allowing the biotransformation of said organic compound, analyzing the obtained compounds and selecting the biotransformed organic compounds.

In a preferred embodiment, the organic compound is an herbicide or a pesticide.

CYP76B1 polypeptide can consequently be used to alter the resistance of plants sensitive to this family of herbicides or pesticides which are metabolized by the CYP76B1 oxygenase activities. Methods of transforming plant cells or plants with a nucleic fragment encoding a given polypeptide and a regulatory sequence providing expression of the given polypeptide in the plant cells are well known. The nucleic acid fragments according to the invention can be used to transform a wide variety of agricultural plants including dicotyledons such as tobacco, cotton, soybean, melon, and monocotyledons such corn, wheat or rice.

The invention comprises a method for screening plant cells or plant which are resistant to a given herbicide or pesticide comprising transforming a plant cell or plant by a vector according to the invention, testing the plant cell or plant for its ability to grow in the presence of a normally inhibitory concentration of said herbicide or pesticide and selecting the plants cells or the plant which are resistant to the herbicide or to the pesticide.

Preferably, said herbicide or pesticide is of the phenylurea family. In a more preferred embodiment said herbicide is the chlortoluron or the isoproturon.

The invention also comprises transgenic plant having increased resistance to herbicides or pesticides wherein said plant is transformed by a vector according to the invention.

The invention finally comprises a method comprising transgenic plant according to the invention for the bioremediation and transgenic plant according to the invention which is an agricultural plant.

›BRIEF DESCRIPTION OF THE DRAWINGS · 1 of 2

FIG. 1 : Primers used for PCR amplification. An ECOD-enriched protein fraction was digested with trypsin and the resulting peptides were microsequenced. Some peptides, showing typical P450 features, were used to design sense or reverse primers for PCR amplification.

FIG. 2 : The nucleotide and deduced amino acid sequences of the Helianthus tuberosus CYP76B1 cDNAs, corresponding to the sequences SEQ ID NO 1 and SEQ ID NO 2. Nucleotides which differ in E3C from those in 76B1 are indicated above the 76B1 nucleotide sequence. The putative limits of the D and E helices are delineated.

FIG. 3 : Amino acid alignment of CYP76B1 with the most closely related plant and animal P450s. CYP76A1 and CYP76A2 from Solanum melanonga (activity unknown, 41.1 and 38% amino acid identity, respectively), CYP71A1 from Persea americana (isoprenoid metabolizing, 38.5%), CYP75A1 from Petunia hybrida (flavonoid 3′,5′-hydroxylase, 37.9%), CYP80 from Berberis stolonifera (berbamunine synthase, 35.5%), CYP73A1 from Helianthus tuberosus (cinnamate 4-hydroxylase, 31%), mouse CYP2D10 (testosterone 16α-hydroxylase, 28.8%), rat CYP1A1 (benzo(a)pyrene hydroxylase, 7-ethoxyresorufine O-deethylase, 7-ethoxycoumarine O-deethylase, 28.8%), human CYP17A1 (steroid 17α-hydroxylase, 27%), and rat CYP2A3 (coumarin 7-hydroxylase, 26.8%).

FIG. 4 : Position of CYP76B1 in a phylogenic tree of the P450s superfamily. The tree shown here results from the alignment of the last 250 amino acids of each P450 protein, approx. from I helix to C-terminus.

FIG. 5 : Steady-state level of the CYP76B1 transcripts in H. tuberosus tuber tissues wounded and treated with xenobiotics. 20 μg of total RNA extracted from tubers, dormant, or aged 48 h in water (H 2 O) or in solutions of chemicals (0.25% (v/v) DMSO, 25 mM MnCl 2 , 20 mM aminopyrine (AP), 8 mM phenobarbital (PB), 1.7 mM flavone (Flav), 100 μM naphthalic anhydride (NA), or 260 μM benzo(a)pyrene (BaP) were analysed in a denaturing formaldehyde gel and transferred by capillary action onto nylon membrane. The RNA blot was successively hybridized with a full-length CYP76B1 DNA probe at high stringency, and with a 300 bp pepper probe coding for a 25S rRNA at low stringency as described in Material and Methods.

FIG. 6 : SDS-PAGE analysis of the microsomes of yeast W(R) transformed with the CYP76B1/pYeDP60 construct and void pYeDP60. Microsomes were prepared from yeast continuously grown in the presence of galactose. Each lane contains 10 μg of microsomal protein.

FIG. 7 : Difference spectra induced by addition of carbon monoxide to reduced yeast microsomes. Spectra were recorded with 0.75 mg/mL microsomal protein in Tris-HCI 50 mM pH 7.5, containing 1 mM EDTA and 20% glycerol. A base-line was recorded after addition of an excess of sodium dithionite to both cuvettes. The difference spectra were obtained after bubbling carbon monoxide for one minute in the sample cuvette. Dotted line: control yeast microsomes. Solid line: CYP76B1-expressing yeast microsomes.

FIG. 8 : Induction of the 7-methoxyresorufin O-demethylase activity by metals, pollutants and other exogenous organic molecules. Slices of dormant tuber of Helianthus tuberosus were placed under survival conditions in oxygenated distilled water and stirred with a current of compressed air in the presence of various metals or organic compounds (effectors). The dealkylase activity, expressed in relative activity, is measured in the microsomes prepared from these tissues after 48 hours of treatment (see Batard et al., 1995).

Table A gives the demethylase activities in the reference tissues (dormant, incubated in water or in the presence of DMSO, used as solvent for certain inducers).

Table B gives the meaning of the abbreviations, as well as the concentrations used.

FIG. 9 : Metabolism of isoproturon by CYP76B1 expressed in the yeast WAT11 (overexpressing cytochrome P450 reductase ATR1 of Arabidopsis thaliana ). Substrate concentration: 200 μM [phenyl-U- 14 C]isoproturon (IPU). Incubation time: 20 minutes in the presence of NADPH. 10 μl of yeast microsomes for a 200-μl assay. Analysis of the metabolites by thin-layer chromatography (identification by analogy with cold standards) from:

A—Control yeast: transformed with the empty plasmid pYeDP60

B—Yeast transformed with the plasmid pYeDP60 containing the coding sequence of CYP76B1.

FIG. 10 : Metabolism of chlortoluron by CYP76B1 expressed in the yeast WAT11 (overexpressing cytochrome P450 reductase ATR1 of Arabidopsis thaliana ). Substrate concentration: 200 μM [phenyl-U- 14 C]chlortoluron (CTU). Incubation time: 20 minutes in the presence of NADPH. 10 μl of yeast microsomes for a 200-μl assay. Analysis of the meabolites by thin-layer chromatography (identification by analogy with cold standards) from:

A—Control yeast: transformed with the empty plasmid pYeDP60

B—Yeast transformed with the plasmid pYeDP60 containing the coding sequence of CYP76B1.

FIG. 11 : Relative increase in steady state level of CYP76B1 CYP81B1 and CYP73A1 transcripts induced by xenobiotics. RNA were prepared from H. tuberosus tuber tissues, sliced and aged in water, or in solutions of different chemicals. The same RNA blot membrane (20 μg total RNA in each lane) was successively hybridized with CYP81B1, CYP73A1 and CYP76B1 32 P-radiolabeled probes. Hybridization signals were quantified with a phosphorimager. Induction is calculated by comparison to the signal recorded with RNA from tissues aged in water. Induction obtained with Fla, NA and B(a)P, which were dissolved in DMSO was compared to that obtained for tissues treated with DMSO alone.

FIG. 12 Comparison of the expression of CYP76B1 in yeast strains coexpressing yeast (W(R)), A. thaliana ATR1(WAT 11) or ATR2 (WAT21) reductases.

A. CO/reduced versus reduced difference spectra measured in microsomes of the three yeast strains after 16 hours of induction with galactose. Microsomal protein concentration in the cuvettes was 900 μg mL −1 . No P450 was detected in microsomes prepared from the same yeast strains transformed with a void plasmid.

›BRIEF DESCRIPTION OF THE DRAWINGS · 2 of 2

B. Western blot analysis of the same microsomes.

M: molecular weight markers; HT: microsomes from H. tuberosus tuber treated with aminopyrine; V: microsomes from yeast transformed with a void plasmid; 76: microsomes from yeasts transformed with CYP76B1. Each lane was loaded with 20 μg microsomal protein.

FIG. 13 : Products resulting from the CYP76B1-dependent metabolism of chlortoluron and isoproturon. Approximately 8 pmoles CYP76B1 in WAT11 yeast microsomes were incubated 60 min at 30° C. with 500 μM substrate, 500 μM NADPH, 1 mM glucose 6-phosphate and 0.5 units glucose 6-phosphate dehydrogenase in 200 μL 0.1 M sodium phosphate pH 7.4. Twenty μL of the acidified and centrifuged incubation medium were directly analyzed by LC-MS using a gradient of 3 to 60% B (100% acetonitrile, 0.08% TFA) in A (H 2 O, 0.1% TFA) in 65 min. Absorbance was monitored at 214 nm.

FIG. 14 : Reactions catalyzed by CYP76B1.

FIG. 15 : Leaf pieces from tobacco transformed with CYP76B1 (left) or with an empty plasmid (right) were aged for 10 days on Murashige and Skoog (MS) medium containing 0.5 μM linuron. CPYP76B1 expression in transgenic tobacco avoids chrorophyll destruction.

DETAILED DESCRIPTION OF THE INVENTION

›Abbreviations · 1 of 2

AP: aminopyrine; B(a)P: benzo(a)pyrene C4H: trans-cinnamate 4-hydroxylase [NADPH: oxygen oxidoreductase (4-hydroxylating), EC 1.14.13.11]; CTUDM: chlortoluton demethylase; DMSO: dimethylsulfoxide ECOD: 7-ethoxycoumarin O-deethylase; EROD: 7-ethoxyresorufin O-deethylase; Flav: flavone; IPUDM: isoproturon demethylase; MCOD: 7-methoxycoumarin O-deethylase; MROD: 7-methoxyresorufin O-deethylase NA: naphthalic anhydride, PB: phenobarbital.

Chemicals

1,8-Naphthalic anhydride was from Aldrich and phenobarbital (5-ethyl-5-phenyl-barbituric acid, sodium salt) from Fluka (St Quentin-Fallavier, France). Aminopyrine was from Merck (Darmstadt, Germany), benzoic acid, salicylic acid, coumarin, umbelliferone and 7-ethoxycoumarin were from Sigma (St Quentin-Fallavier, France). Other coumarin derivatives were gifts from Dr. J. L.

Riviére, Ecole Vétérinaire, Lyon, France. Resorufin derivatives were from Pierce.

Synthesis of [ 14 C]-ferulic acid, isoscopoietin and scopoletin was described by Cabello-Hurtado et al. (1998b). [3- 14 C]trans-Cinnamic acid was from Isotopchim (Ganagobie, France), [1- 14 C]lauric acid from CEA (Gif-sur-Yvette, France), [1- 14 C]capric acid and [phenyl-U- 14 C]2,4dichlorophenoxyacetic acid were from Sigma. [7 14 C]-Benzoic acid, [1- 14 C]myristic acid, [1- 14 C]palmitic acid, [1- 14 C]stearic acid, [1- 14 C]oleic acid and [1- 14 C]linoleic acid were from DuPont (NEN-England). [ 14 C]Geraniol and [ 14 C]-S-naringenin were kindly provided by Dr. D. Hallahan (IACR-Roathamsted, UK) and Dr. G. Kochs (Institut für Biologie II, Freiburg, Germany), respectively. [dichlorophenyl-U- 14 C]Diclofop was kindly provided by Hoechst (Frankfurt, Germany), [triazine-2- 14 C]chlorsulfuron by Du Pont de Nemours (Wilmington, Del.), and [phenyl-U- 14 C]bentazon by BASF (Ludwigshafen, Germany). [phenyl-U- 14 C]Chlortoluron, [phenyl-U 14 C]isoproturon, [triazine-U- 14 C]simazine, as well as reference metabolites, were generous gifts from Novartis (Basel, Swizerland).

Plant Material

Jerusalem artichoke ( Helianthus tuberosus L. var. Blanc commun) tubers were grown in open field, harvested in November and stored in plastic bags at 4° C. in the dark. For aging experiments, tubers were sliced (1.5 mm thick), washed and aged for 48 h in aerated (4 L.min −1 ) distilled water containing various chemicals as described previously (13). The MnCl 2 solution was adjusted to pH 7. Water-insoluble compounds (β-naphthoflavone, naphthalic anhydride and benzo(a)pyrene) were first dissolved in 4 mL of dimethylsulfoxyde (DMSO) and then added to the aging medium (1.5 L). A control was performed with DMSO alone.

RNA Isolation and RNA Blot Hybridization

Total RNA was isolated as described by Lesot et al. (30). Denatured RNA was separated in the presence of formaldehyde through a 1.2% agarose gel and transferred onto a nylon membrane Hybond N + , Amersham. RNA blots prehybridization and hybridization with a full-length CYP76B1 probe, radiolabeled with 50 μCi [α- 32 P]dCTP by random priming, were carried out at 65° C. according to established procedures (31). Membranes were washed twice for 10 min with 2×SSC, 0.1% SDS and once for 10 min with 0.2×SSC, 0.1% SDS at room temperature, then twice for 30 min with 0.2×SSC, 0.1% SDS at 55° C. Hybridization signal was recorded by autoradiography and transcripts were quantified using a phosphorimager (Fuji BAS1000). RNA amounts were standardized by hybridization at 55° C. to a 300 pb Capiscum annuum 25S rRNA probe. The same membrane was successively hybridized with the CYP81 B1 (46% GC), CYP73A1 (47% GC), CYP76B1 (43% GC), again CYP81 B1, and 25S rRNA probes (45×10 6 cpm in each case). It was stripped by boiling in 0.1% SSC between successive hybridizations. Slot blot analysis was performed in the same conditions using 10 μg total RNA in each slot.

cDNA Library and Screening

Poly(A) + RNA were prepared from H. tuberosus tuber tissues sliced and aged 24 h in the presence of 20 mM aminopyrine (30). A cDNA library was constructed in the vector λ-ZAPII (Stratagene), starting from 5 μg polyadenylated RNA, according to the manufacturer's instructions. Degenerate primers were designed (FIG. 1) from peptides isolated of a partially purified P450 fraction with ECOD activity (1). PCR was performed using 4 μL of amplified library (6×10 7 pfu) as a template, 600 pmol of the degenerate primers and 20 pmol of a vector specific primer. The reaction mixture, containing 300 μM of each dNTP in reaction buffer (Tris-HCI 100 μM pH 8.3, KCI 110 μM, MgCl 2 16 μM), was heated 2 minutes at 94° C. before addition of 0.1 unit of Taq DNA polymerase (Goldstar). After 3 min at 94° C., 30 cycles of amplification were carried out as follows: 1 min denaturation at 94° C., 1.5 min annealing at 53° C., 2.3 min extension at 72° C. The reaction was completed by 10 min extension at 72° C.

The 1.3 kb fragment amplified was electroeluted (31), cloned in a pGEM-T vector (Promega) according to the manufacturer's instructions, sequenced and characterized as a P450 fragment. It was then used as probe to screen approximately 2×10 5 plaques from the aminopyrine-induced tuber cDNA library. Radiolabeling, prehybridization and hybridization were carried out as described for RNA blots. The insert length of 21 of the 95 positive clones was determined by PCR performed directly on the phage suspension using 20 pmoles of the SK and T7 vector-specific primers. Four clones were selected, purified by low-density screening, before rescuing pBluescript phagemids. Nucleotides missing at the 5′-end of the longest insert were obtained using the 5′-AmpliFINDER RACE kit from Clontech according to the manufacturer's instructions. The 5′-amplified fragment was digested by EcoRI and NheI, and subcloned in pBS containing the longest cDNA digested by the same enzymes.

Expression in Yeast

BamHI and EcoRI sites were introduced by PCR just upstream of the ATG and downstream of the stop codon of the CYP76B1 coding sequence, using the primers 5′-ATATATGGATCCATGGATTTTCTTATAATAGTGAGTAC (sense) 5′-TATATAGAATTCATGCTAGTTCAATGGTATTGGAACAACAC (reverse) (SEQ ID NO 3 and SEQ ID NO 4 respectively). The PCR mixture was preheated for 2 min at 92° C. before addition of 1 unit of Pfu DNA polymerase (Stratagene). After 3 min additional heating at 92° C., 30 cycles of amplification were carried out as follows 1 min denaturation at 92° C., 1 min annealing at 52° C., 2 min extension at 72° C. The reaction was completed by 10 min extension at 72° C. After BamHI/EcoRI digestion, the 1470 bp coding sequence was inserted into the vector pYeDP60 (32). Transformation of Saccharomyces cerevisiae W(R), WAT11 and WAT21, and yeast growth were conducted according to Pompon et al. (32). Yeast microsomes were prepared as described in Pierrel et al. (33) with addition of 1% SAB, 2 mM β-mercaptoethanol, 10 mM sodium disulfite and 1 mM PMSF to the extraction buffer. When indicated, 0.5 mM δ-aminolevulinic acid methyl ester (Sigma) was added to the induction medium, or cells were stored at 4° C. for 24 h before preparation of the microsomes.

›Abbreviations · 2 of 2

Production of Antibodies and Western Blot Analysis

CYP76B1 4-His-tagged at the C-terminus was generated by PCR-modification of its coding sequence using the reverse primer 5′-TATATAGAATTCATGCTAATGATGATGATGGTTCAATGGTATTGGAACAACAC (SEQ ID NO: 27) with sense primer and PCR conditions as above. The modified protein was expressed in yeast using the same procedure as for the wild type. Microsomes were solubilized in 2% Triton X-114 followed by phase-partitioning as described previously (Gabriac et al., 1991). The protein was purified on a Ni 2+ -loaded HiTrap Chelating column (Pharmacia Biotech) using the procedure recommended by the manufacturer, with elution in sodium phosphate 50 mM pH 7.4 containing 0.5 M NaCl and 1 M imidazole. Polyclonal antibodies were raised in rabbits by successive injections of once 16 μg and 5 times 8 μg purified protein emulsified in Freund's complete and incomplete adjuvants, respectively, and used for western blot analysis as in (Werck-Reichhart et al, 1993).

Analytical Methods and Enzyme Assay

LC-MS was performed by coupling a HPLC system (140A Perkin Elmer, Applied Biosystems Division, Foster City, Calif.) on a VG BioQ triple quadrupole. The separation on a reversed phase column (Macherey-Nagel 300-5 C18 2×125 mm) was flow splitted via a stainless steel Tee with approximately {fraction (1/15)} of column effluent being directed towards the mass spectrometer, the {fraction (14/15)} being directed towards UV detector (Waters 496). The mass spectra were obtained by scanning from m/z 300-1800 in 6 seconds with a cone voltage of 50V.

Spectrophotometric measurements of P450 content and substrate binding were performed as in (Gabriac et al., 1991) and SDS-PAGE was performed as in Gabriac et al. (34). Gels were stained with Coomassie Blue R-250. Alkoxycoumarins and alkoxyresorufins O-dealkylation was measured by fluorometry (Werck-Reichhart et al., 1990). The data are means ± S.D. of triplicates.

The conversion of other molecules was assayed by TLC or HPLC analysis of polar metabolites formed from radiolabeled compounds (Cabello-Hurtado et al., 1998a, b). NADPH-cytochrome c reductase was assayed according to (Benveniste et al., 1986). Kinetic data were fitted using the nonlinear regression program DNRPEASY (Duggleby, 1984).

Proteins were quantified using the BCA Protein Assay from Pierce or the Bio-Rad Protein Assay.

Sequence Analysis and Comparison

Double-stranded pBluescript subclones were sequenced using the prism Ready Reaction Dye Deoxy Terminator Cycle method of Applied Biosystems Inc. The sequence data were analyzed using the GCG Sequence Analysis Software Package version 8.1 (35). Sequences were first aligned using ClustalW (35), the alignment refined by hand and diplayed using SeqVu 1.0.1. (Garvan Institute, Sydney). Phylogenies were calculated using programs Protdist and Neighbor from the Phylip package (36). The tree was drawn using Treeview (37).

EXAMPLES

›Examples16

›Example 1

Cloning of the CYP76B1 cDNA

As previously reported (1), thirty peptides resulting from the trypsin digestion of an ECOD-enriched fraction isolated from Mn ++ -induced H. tuberosus tuber tissues were microsequenced using the 473 A sequence analyzer of Applied Biosystem. Some of them clearly corresponded to P450 sequences: peptides 1 and 2, were different and both homologous to the heme-binding site; peptide 3, was homologous to a sequence located around residue 380 in enzymes of the animal CYP4 family; peptide 4, corresponded to a sequence located around residue 330 in enzymes of the plant CYP75 family (FIG. 1 ). Since these results suggested that our purified fraction was actually a mixture of different P450 isoforms, we decided to try the isolation of the corresponding cDNAs using a PCR approach.

Several degenerate primers were, therefore, designed (FIG. 1 ): i) three sense primers (P1, P3 and P4), corresponding to the N-terminus (which sequenced as a single peptide) and to peptides 3 and 4, ii) three reverse primers (P2, PH and PE) corresponding to the conserved and specific segments of peptides 1 and 2. A λ-ZAPII library of cDNA from aminopyrine-induced H. tuberosus tuber tissues was used as a template for the PCR experiments. Repeated attempts, using different annealing temperatures only led to amplification from primers P2 and SK under the conditions described in Material and Methods. The 1.3 kbp DNA fragment obtained was isolated and subcloned into a T-tailed vector. Sequencing showed that it coded for a typical P450 protein. Its hybridization on total RNA isolated from dormant tubers, wounded and aminopyrine-induced tissues, revealed a transcript of approximatly 1.6 kb, strongly expressed after aminopyrine treatment. To obtain a full-length cDNA, approximately 2×10 5 plaques of the cDNA library were then screened with this probe. Four clones of around 1.6 kb were selected and purified. They were all found to contain only partial coding sequences. Three of them were fully sequenced. Sequence analysis and alignment with other P450 sequences revealed that the longest of the inserts (2DD) was missing around 25 nucleotides. The missing 5′-sequence was obtained by 5′-RACE and a 1470 bp full-length cDNA reconstituted.

From the other inserts fully sequenced, one was found completely identical to 2DD, the other, E3C, differed from the 2DD clone by 7 conservative and one non-conservative replacements and by an insertion of two codons (FIG. 2 ). Minor differences were also observed in the 3′ non-coding sequences. The overall nucleotide identity between the two cDNAs being higher than 98%, they very likely correspond to allelic variants.

›Example 2

Characteristics of the CYP76B1 Protein

The full-length cDNA (SEQ ID NO 1) has non-coding sequences of 24 bp and 240 bp at the 5′ and 3′ ends, respectively, and codes a protein of 490 amino acids (SEQ ID NO 1) (FIG. 2 ), with an Mr of 54 956, and a relatively acidic pl of 6.06. Comparison to other P450 sequences reveals a high overall amino acid identity to the CYP71, CYP76 and CYP75 families (FIG. 3 ): 38.5% to the avocado CYP71A1, 38% to the Solanum melanonga CYP76A2, 37.9% to the Petunia hybrida CYP75A1 (a 3′,5′-flavonoid hydroxylase). Highest identity (i.e. 41.1%) is observed with CYP76A1. Elongated 2DD was thus recorded as the first member of a new 76 subfamilly and termed CYP76B1 by the P450 nomenclature committee (c/o Dr. D. R. Nelson, University of Tennessee, Memphis). CYP76B1 also shows high identity to the plant CYP80, involved in the biosynthesis of the alkaloid berbamunine (35.5%), CYP83 catalyzing the 5-hydroxylation of ferulic acid (34.6%) and CYP73 catalysing the 4-hydroxylation of cinnamic acid (30.1%). Most closely related animal P450s are steroids, drugs or coumarins metabolizing enzymes: CYP2D10 (28.8%), CYP1A1 with 7-ethoxycoumarin O-deethylase activity (28.8%), CYP2D3 (28.4%), CYP17A1 (27%), CYP2A3 with coumarin 7-hydroxylase activity (26.8%).

CYP76Al is missing around 40 amino acids at its N-terminus. N-terminus is the less conserved segment of the P450 proteins. Evaluation of the identity of CYP76B1 to CYP76A1 is thus slightly biased. CYP76B1 could actually be considered as the first member of a new plant P450 family, according to the criteria defined by Nelson et al. (38), its overall amino acid identity to any other full-length P450 being lower than 40%. Phylogenetic analysis provides different results, depending on whether the analysis is performed using different methods, with the whole sequence or using the most conserved 250 last amino acids. In most cases, it indicates (FIG. 4) that CYP76B1 is more closely related to CYP75 proteins than to CYP76A1 or A2, and also questions the classification of CYP76B1 in the CYP76 family. CYP76B1 is thus a good illustration of the difficulty of use the 40%-55% rule, although efficient in the case of animal enzymes, to delimit families and subfamillies in the case of plant P450s. The phylogram in FIG. 4 also shows that CYP76B1 shares common ancestors with CYP93, CYP71, CYP92, CYP84, CYP80, CYP81 and CYP83 enzymes, but is more distantly related to CYP73 and CYP79 proteins. CYP76B1 clearly belongs to the A group of plant P450s (39) deriving from a common ancestor and related to the main families of xenobiotic-detoxifying animal P450.

›Example 3

Optimized Expression of CYP76B1 in Yeast

The CYP76B1 coding sequence was expressed in three engineered yeast strains, W(R), WAT11 and WAT21, which also expressed respectively yeast or A. thaliana P450 reductases ATR1 and ATR2 under the transcriptional control of the same galactose-inducible promoter GAL10-CYC1 (Urban et al., 1997). The levels of expression of CYP76B1 were compared in the different yeast strains after 12 h, 16 h, 24 h, and 36 h induction with galactose, or continuously grown in the presence of galactose. Highest expression was obtained using the WAT11 strain continuously grown in the presence of galactose, reaching 157 pmol mg −1 microsomal protein (0.86% of microsomal protein). Contrary to CYP81 B1 (Cabello-Hurtado et al., 1998a), CYP76B1 was expressed at a significant level in the presence of yeast reductase, but its expression was consistently 15 to 40% lower in WAT21 or W(R) than in WAT11 (FIG. 12 ). Expression did not increase when δ-aminolevulinic acid was added to the growth medium, and significantly decreased when cells were grown at 25° C. or stored for 24 h at 4° C. before extraction.

›Example 4

Accumulation of the CYP76B1 Transcripts in Xenobiotics-Treated Plant Tissues

The steady-state level of the CYP76B1 transcripts in the H. tuberosus tuber dormant, wounded or treated with different chemicals was compared by RNA blot hybridization (FIG. 5 ). CYP76B1 mRNA were not detected in dormant tubers. Very low levels were found in wounded tissues. High levels of CYP76B1 transcripts, however, accumulated when the tuber tissues were incubated in the presence of xenobiotics: DMSO (3×the level detected in the control), phenobarbital (×6), manganese (×37) or aminopyrine (×44). By contrast, treatment with planar aromatic molecules, including benzo(a)pyrene, flavone and naphthalic anhydride, did not seem to affect or slightly reduce CYP76B1 mRNA accumulation.

CYP76B1 Induction by Xenobiotics Compared to Other P450s

Two other P450 cDNAs have been also isolated from H. tuberosus , a cinnamate 4-hydroxylase CYP73A1 (Teutsch et al., 1993) and a fatty acid in-chain hydroxylase CYP81B1 (Cabello-Hurtado et al., 1998 a). Increased accumulation of all three P450 mRNAs was detected following treatment of tuber tissues with xenobiotics. However, successive hybridizations of CYP76B1, CYP73A1, and CYP81B1 probes with the same RNA gel blot prepared with tuber tissues treated with different chemicals (DMSO, MnCl 2 , AP, PB, Fla, NA, and B(a)P) indicated that by far the highest increase in steady state level of P450 transcripts was achieved in the case of CYP76B1 (FIG. 11 ). Similar results were obtained by parallel slot-blot hybridization analysis of the same set of total RNA. Tuber tissues treated with chemicals, in particular Mn 2 + and AP accumulated 2 to 6 fold more transcripts coding for CYP76B1 than for CYP73A1 or CYP81B1.

›Example 5

CYP76B1 Codes for a P450 with O-dealkylase and N-dealkylase Activities

CYP76B1 Expression in Yeast

The CYP76B1 coding sequence devoid of its non coding sequences was inserted into the pYeDP60 shuttle vector and expressed in the engineered yeast strains W(R) and WAT11, overexpressing respectively yeast or A. thaliana reductases, to determine its catalytic activity. Using this plasmid and yeast strains, the expression of both P450 and yeast P450-reductases are under the control of the same galactose-inducible GAL10-CYC1 promoter (32). Yeasts transformed with the void pYeDP60 plasmid construct were used as control. In microsomes of CYP76B1/pYeDP60 transformed yeasts continuously grown in the presence of galactose, an over-expressed protein of approximately 54 kDa was clearly detectable (FIG. 6 ). In W(R) spectrally detectable P450 content was about 70 pmoles.mg −1 protein (FIG. 7 ). No P450 was detected in control yeast transformed with the void pYeDP60.

CYP76B1 ECOD Activity

Microsomes from the control and CYP76B1-expressing W(R) yeasts were tested for ECOD activity (Table 1). No activity was detected in the control. Microsomes of yeast expressing CYP76B1 actively catalyzed NADPH-dependent O-deethylation of the fluorescent substrate. The reaction proceeded with a K m,app of 74 mM and a V max of 600 pkat.pmole −1 P450. The activity, however, was not inhibited by polyclonal antibodies raised against the ECOD-enriched fraction previously purified in the laboratory. In addition, no activity was observed in the presence of cumene hydroperoxide.

In contrast, microsomes from aminopyrine-treated tuber tissue were capable of cumene hydroperoxide-dependent 7-ethoxycoumarin dealkylation and their NADPH-dependent deethylase activity was inhibited about 50% by the anti-ECOD antibodies.

Table 1: NADPH- and cumene hydroperoxide-dependent ECOD activity in microsomes from aminopyrine-induced H. tuberosus tuber tissues and in microsomes from control and CYP76B1-transformed yeast. Immunoinhibition by anti-ECOD antibodies.

Fluormetric assays contained 400 μM 7-ethoxycoumarin and were performed with 50 μM NADPH or 125 μM cumene hydroperoxide as electron donor. 10 μL of non-immune serum or of serum raised against purified ECOD fraction were preincubated 2 min at room temperature with 10 μL of microsomes before addition of the reaction mix. n.d.: not detectable.

Other CYP76B1 O-dealkylase Activities

The O-dealkylation of various other substrates of exogenous origin has also been performed with the microsomes prepared from W(R) and WAT11 transformed yeast strains. The turnover of the dealkylation are:

methoxycoumarin: 13 min −1 (W(R)) and 31 min 31 1 (WAT11)

ethoxycoumarin: 10 min −1 (W(R)) and 30 min −1 (WAT11)

methoxyresorufin: 15 min −1 (W(R)) and 41 min 31 1 (WAT11)

ethoxyresorufin: 6 min −1 (W(R)) and 22 min −1 (WAT11).

›Example 6

Induction of the MROD Activity by Metals, Pollutants and Other Exogenous Organic Molecules

CYP76B1 very effectively catalyzes the O-dealkylation of 7-methoxyresorufin (see above). It has been shown in the laboratory that the 7-methoxyresorufin O-dealkylase activity is very strongly induced in the tuber of H. tuberosus brought into contact with metals (manganese, mercury) or with exogenous organic molecules (aminopyrine, phenobarbital, benzo(a)pyrene, 3-methylcholanthrene, lindane, 8-methoxypsoralen, diethylhexylphthalate, naphthalic anhydride and the like) (FIG. 8 ).

CYP76B1 N-dealkylase Activities

Mono- and didealkylation of herbicides of the phenylurea class by CYP76B1 expressed in W(R) and WAT11 yeast strains

Mono- and didealkylation of isoproturon

In the W(R) strain, the turnover of the first dealkylation of isoproturon is 40 min −1 . In the WAT11 strain, it is 147 min 31 1 (FIG. 9 ).

Mono- and didealkylation of chlortorulon

In the W(R) strain, the turnover of the first dealkylation of chlortorulon is about 376 min −1 . In the WAT11 strain, it is 803 min −1 (FIG. 10 ).

No metabolism is detected in the yeasts transformed with the vector lacking the CYP76B1 sequence.

›Example 7

Classes of Exogenous Molecules Metabolized by CYP76B1

Using transformed WAT11 yeast microsomes, we first assayed metabolism of endogenous molecules known or suspected to be substrates of P450 oxygenases from H. tuberosus tuber tissues: phenolics (cinnamate, benzoate, ferulate, naringenin, scopoletin, isoscopoletin), isoprenoids (geraniol, abcisic acid, obtusifoliol), and fatty acids (capric, lauric, myristic, palmitic, oleic, linoleic and linolenic acids). No metabolite of any of these molecules could be detected. We then tested different classes of foreign compounds, including molecules previously shown to be metabolized by the plant tuber microsomes (Higashi et al., 1981; Fonné, 1985; Fonné-Pfister et al., 1988 Werck-Reichhart et al., 1990; Batard et al., 1995): B(a)P and the drug aminopyrine, fluorescent alkoxycoumarins (7-methoxycoumarin, 7-propoxycoumarin, 7-butoxycoumarin) and alkoxyphenoxazones (7-methoxy-resorufin, 7-ethoxyresorufin, 7-pentoxyresorufin, and 7-benzyloxyresorufin), and representative members of different classes of herbicides (2,4-D, diclofop, chlorsulfuron, bentazon, dicamba, chlortoluron and isoproturon). In addition to 7-ethoxycoumarin, five xenobiotics were actively converted into more polar metabolites (Table 2). No metabolism was detected in the absence of NADPH or in control microsomes prepared from yeast transformed with a void plasmid.

Legend of Table 2

7-Methoxycoumarin-(MCOD), 7-ethoxycoumarin-(ECOD), 7-methoxyresorufin-(MROD) and 7-ethoxyresorufin-O-dealkylase (EROD) activities were determined fluorometrically using 16 pmol CYP76B1 per 2 mL assay. Demethylation of chlortoluron (CTUDM) and isoproturon (IPUDM) was tested using: 14 C-labelled substrates with approximately 3 pmol CYP76B1 in the 200 μL assays. Conversion was estimated from the sum of the two polar metabolites detected after TLC analysis. Data are means + S.D. of two to four determinations. n.d.: not detected.

›Example 8

Characterization of the Phenylurea Metabolites

Microsomes from AP-treated H. tuberosus tuber, when incubated with NADPH and chlortoluron, produce principally mono- and di-N-dealkylated metabolites and minor amounts of the ring-methyl hydroxylated compound (Fonné, 1985). It was unclear whether these different metabolites were generated by a single or several P450 enzymes. The products of CYP76B1-dependent metabolism of chlortoluron and isoproturon were thus extensively characterized. Both TLC and HPLC analysis of the metabolites, including co-chromatography with reference standards (not shown), suggested a sequential conversion of the herbicide to mono- and di-dealkylated derivatives. This was further confirmed by LC-MS analysis (FIG. 13 ). For both chlortoluron and isoproturon, time dependent and sequential formation of m/z −14 and −28 molecular ions was observed. To confirm the capacity of CYP76B1 to catalyze the double dealkylation of chlortoluron, the mono-demethylated derivative was purified by TLC from large scale incubations of transformed yeast microsomes with NADPH and 14 C-chlortoluron. In the absence of chlortoluron, its mono-N-demethylated derivative was actively dealkylated by CYP76B1.

From fluorescence emission spectra of the products of alkoxycoumarins and alkoxyresorufins metabolism, with maxima at 460 (excitation at 380 nm) and 585 nm (ex: 530 nm) respectively, it was assumed that all compounds were O-dealkylated to form umbelliferone or 7-hydroxyresorufin.

›Example 9

Catalytic Parameters of the CYP76B1-Dependent Reactions

Methoxy- and ethoxyresorufins were the best substrates of CYP76B1, with very high k cat /K m of 237 and 165 min −1 μM −1 , respectively in microsomes from the WAT11 yeast strain (Table 3). The next best substrate was chlortoluron, the first dealkylation proceeding significantly faster than the second. The first demethylation of isoproturon was slower than that of chlortoluron. 7-ethoxycoumarin and 7-methoxycoumarin turned out as the poorest substrates of CYP76B1. In terms of turnover number, phenylureas were the fastest metabolized substrates of CYP76B1 (k cat of 803 and 147 min −1 for the first demethylation of chlortoluron and isoproturon, respectively), the second demethylation (k cat =46 min −1 for monodemethyl-chlortoluron) being the rate limiting step for total detoxification of the herbicides.

Legend of Table 3

CYP76B1 concentrations in the MCOD, ECOD, MROD and EROD fluorometric assays were 1.5 nM or 2.1 nM, depending on the coexpressed ATR1 or yeast reductases. In the CTUDM assays, CYP76B1 concentrations were 1.7 nM (ATR1) and 8 nM (yeast), respectively. It was 12 nM for the determination of the catalytic parameters of monodemethyl-CTUDM, and 1.7 nM (ATR1) or 20 nM (yeast) in the IPUDM assays. Products were quantified by direct TLC analysis of 100 μL of the acidified incubation medium after 6 min incubation at 30° C. for the CTUDM and IPUDM assays, and after 9 min incubation for the monodemethyl-CTUDM.

›Example 10

Influence of the P450 Reductases on CYP76B1 Activity

Preliminary results (Table 2) having indicated that differences in catalytic activity were larger than difference in P450 expression in the three yeast strains, the catalytic parameters of xenobiotic metabolism were determined with CYP76B1 expressed in both W(R) and WAT11 microsomes (Table 2). The nature of the coexpressed reductase did not much influence the K m of the reactions, although K m values measured in the presence of the A. thaliana reductase ATR1 were consistently lower than those determined in the presence of yeast reductase. However, large changes in k cat were observed depending on the origin of the coexpressed reductase. The maximum velocities of oxygenation of all six substrates were about three times higher in the presence of ATR1. Catalytic parameters were also measured in the presence of the other A. thaliana reductase ATR2 with methoxyresorufin as substrate. They were not significantly different (K m =0.185 μM; k cat =43 min −1 ) from those determined with microsomes from WAT11.

The observed variations in k cat could result from differences in reductase expression in W(R) and WAT yeast strains. We thus compared the velocities of NADPH-dependent cytochrome c reduction in microsomes from the three strains. The reductase activity in microsomes from 76B1W(R) (0.74+0.057 μmol min −1 mg −1 ) was higher than in microsomes from transformed WAT11 and WAT21 (0.61±0.023 and 0.60±0.01 μmol min −1 mg −1 , respectively). Differences in k cat observed in our experiments are thus likely to result from faster electron transfer between plant enzymes, or from a plant reductase-induced change in CYP76B1 conformation or stability.

›Example 11

Other Phenylurea Herbicides

Metabolism of both chlortoluron and isoproturon suggests that other herbicides of the class of phenylurea could be substrates as well, therefore we tested the binding of a set of related molecules in the active site of CYP76B1. The binding of substrates into the catalytic site of a P450 usually induces a shift of its maximum of absorbance, redox potential and iron spin state (Raag and Poulos, 1989) resulting from the displacement of the water sixth ligand of the heme iron. It is easily detected by differential spectrophotometry as a so-called type I spectrum with a peak at 390 nm and a trough at 420 nm (Jefcoate, 1978). The variation of the differential absorbance ΔA 390-420 versus substrate concentration allows the calculation of an apparent dissociation constant (K s ). A high ΔA max induced by the ligand is usually an indication of correct positioning for catalysis. Therefore, the high ΔA max induced by the binding of the molecules in Table 4 suggests that a similar positioning of the dimethylurea function close to heme iron and favorable to catalysis is maintained for many phenylureas. Affinity for the active site seems to be largely governed by the substituents on the phenyl ring, the presence of ring-deactivating halogens being more favorable than methyl or other potentially activating substituents. Replacement of one of the N-methyls by a hydroxymethyl group also seems to favor the binding of the molecules in the active site of CYP76B1.

Legend of Table 4

CYP76B1 was 60 nM in the assays. Difference spectra were recorded after the addition of increasing concentrations of ligands to the sample cuvette. An equal volume of the herbicide solvent (DMSO) was added to the reference. K s and ΔA max at saturating ligand concentration were calculated from the double-reciprocal plots of ΔA (390-420 nm) versus substrate concentrations.

›Example 12 · 1 of 5

CYP76B1 Expression in Transgenic Tobacco Avoids Chlorophylls Destruction

The CYP76B1 cDNA was inserted in vector pBDX (Gachotte D., 1995). The resulting vector was mobilized into Agrobacterium tumefaciens strain LBA4404 by triparental mating (Ditta G. et al., 1980). Plant transformation was realized according to Horsch et al. (1985): tobacco leaf disks were soaked for 10 minutes in an Agrobacterium solution, blotted dry and placed on MS callus-inducing medium containing 500 μg/ml cefotaxime and 100 μg/ml kanamycin. After four to six weeks, shoots were transferred on MS-rooting medium containing 100 μg/ml cefotaxime and 100 μg/ml kanamycin. After rooting, plants were transferred in soil.

CYP76B1 is a new plant P450 that has been classified in the same family as CYP76A1 and CYP76A2 previously isolated from Solanum melanonga seedlings (40). No information is available concerning the possible function of these two eggplant P450s. CYP76B1 also shares relatively high sequence identity to CYP75s which are 3′ and 5′-hydroxylases of the flavonoid B-ring, involved in the synthesis of anthocyanin (41). All enzymes most closely related the CYP76s belong to the A group of plant P450s, and are known or suspected to catalyze oxidation steps of plant secondary metabolism (39). CYP76B1 is thus likely to catalyze an oxygenation reaction in the synthesis of some pigment or defense related molecule. Expressed in yeast, CYP76B1 is able to catalyze the O-deethylation of the model fluorescent substrate 7-ethoxycoumarin. The reaction proceeds with a V max /K m of 0.13, i. e. much more efficiently than when catalyzed by the H. tuberosus CYP73A1 or by the tobacco cTBP, which were previously shown to O-deethylate 7-ethoxycoumarin with a V max /K m of 0.011 and 0.0023, respectively (29, 33). CYP76B1 is also an efficient catalyst compared to animal P450s reported to dealkylate 7-ethoxycoumarin like CYP1A1 (V max /K m =0.66), CYP1A2 (0.02) or CYP2E1 (0.03) (24). Most known substrates of all these 7-ethoxycoumarin metabolizing P450s are planar aromatic molecules. This may indicate that physiological or other good alternate substrates of CYP76B1 could be planar aromatic compounds. It would be further confirmed by the fact that all substrates of CYP76B1 identified so far are also planar aromatic molecules (FIG. 14 ). The high catalytic efficiency of 7-alkoxycoumarins and 7-alkoxyresorufins metabolisms compared to other animal and plant P450s also suggests that CYP76B1 has a less stringent substrate specificity than most plant enzymes, and is maybe a good metabolizer of exogenous molecules and a potential tool for bioremediation. CYP76B1-dependent metabolism of xenobiotics will, therefore, be further investigated.

Two allelic variants of CYP76B1 , E3C and 2DD, were isolated. High gene polymorphism has been reported in the case of some families of rapidly evolving mammalian or insect P450s important for the detoxification of drugs or insecticides (42, 43). In the context of the plant-pathogen warfare, a similar polymorphism and rapid evolution would be expected for enzymes directly participating in plant defense against pathogen attack. On the basis of sequence alignments, the insertion in E3C can be predicted to be located in the β sheet at the junction between helices D and E, or at the beginning of the E helix. This region is not likely to participate to the binding of substrate according to the multiple homology alignments (44) or mutant analysis (45) performed on animal enzymes. Only 2DD was expressed in yeast. Possible differences in substrate specifity or catalytic efficiency between the two variants could be nevertherless interesting to investigate, once more substrates of the enzyme are identified. On a genomic Southern blot analyzed with CYP76B1 (not shown) a complex pattern of strongly and more weakly hybridizing bands was detected. This seems to indicate that additional variants or closely related genes may be present in H. tuberosus.

We show here that CYP76B1 catalyzes the mono- and di-N-demethylation of both chlortoluron and isoproturon. Other phenylureas bind its active site with high affinity. Their positioning close to the heme iron is favorable to catalysis. Such binding parameters together with preliminary analysis of metabolites (not shown) indicate that CYP76B1 dealkylates most phenylureas, including the methoxylated forms like monolinuron or chlorbromuron. The K s of CYP76B1 for diuron (20 μM), is very similar to the K m previously reported for diuron demethylation (15 μM) in cotton seedling hypocotyl microsomes (Frear et al., 1969). This suggests that CYP76B1 is the H. tuberosus orthologue of the phenylurea dealkylase originally characterized by Frear et al. (1969) in cotton.

A few other P450s have previously been reported to metabolize chlortoluron. Recombinant human CYP1A1 (Shiota et al., 1994) and CYP3A4 (Mehmood et al., 1995) have low regiospecificity and catalyze both N-demethylation and ring-methyl hydroxylation of the herbicide. Although turnover numbers were not reported, data available indicate moderate efficiency. Two yeast-expressed plant enzymes, CYP73A1 (Pierrel et al., 1994) and CYP81 B1 (Cabello-Hurtado et al., 1998a), were also reported to catalyze ring-methyl hydroxylation of chlortoluron. In both cases, however, the reaction was extremely slow. This contrasts with very fast N-demethylation observed with CYP76B1. Turnover rates found for the first demethylation of chlortoluron and isoproturon (803 and 147 min −1 ) very favorably compare to the turnover measured with physiological substrates. Even the second demethylation which is the slow step for complete detoxification of chlortoluron proceeds with a relatively high kCat of 46 min −1 . CYP76B1 is thus expected to be a major phenylurea metabolizing P450 in higher plants, and probably plays a significant role in the detoxification and selectivity of this broad class of photosystem II inhibitors. Phenylureas have been widely used for selective weed control in cereal crops and are considered as serious environmental contaminants. It may thus provide a strategy for bioremediation of contaminated sites.

›Example 12 · 2 of 5

Results from RNA blot hybridization show that the expression of CYP76B1 is strongly induced by different categories of xenobiotics, including low molecular weight solvent (DMSO), metal salt (MnCl 2 ), and globular organic molecules (i.e. drugs like aminopyrine or phenobarbital). The best inducer was the antipyretic drug aminopyrine, which is also a P450 substrate in H. tuberosus (17). Planar compounds like benzo(a)pyrene, naphthalic anhydride and flavone were ineffective or slightly reduced CYP76B1 expression.

Taken as a whole, our results suggest that the induction of alkoxycoumarin and alkoxyresorufin O-dealkylase activities in H. tuberosus provides a general marker of contamination by metals, solvents, as well as globular and planar organic molecules. The NADPH-dependent enzymic activity reflects the increased expression of several P450 proteins. CYP76B1 specific probes, however, seem to constitute more selective and sensitive tools, very responsive to some metals or to globular organic contaminants. The increase in alkoxycoumarin and alkoxyresorufin O-dealkylase activities, the increase in the CYP76B1 protein or the increase in the CYP76B1 transcripts in plant tissues can therefore be used as markers of chemical pollution of the atmosphere, of waters or of soils.

The expression of this sequence in yeast has shown that it encoded an enzyme very actively catalyzing the mono- and didealkylation of the two herbicides of the phenylurea family, chlortoluron and isoproturon. CYP76B1 very effectively attacks the N-dimethyl group which it oxidizes into an amine. All the phenylureas, and numerous other pesticides, carry this functional group and are therefore potential substrates of CYP76B1. Such a metabolism abolishes the phytotoxicity of these herbicides. CYP76B1 can consequently be used to manipulate the tolerance of plants sensitive to this family of herbicides. In the plant, CYP76B1 therefore appears to play an important role for the detoxification of herbicides.

On the other hand, the animal gene used by Shiota et al. CYP1A1) metabolizes chlortoluron with a fairly low efficiency, mainly by hydroxylation on the methyl at position 4 of the aromatic ring. This type of metabolism cannot be applied to the other phenylureas which are differently substituted at the level of the aromatic ring. CYP1A1 has, moreover, a major disadvantage for an agricultural use: it catalyzes the activation of very common industrial pollutants, such as benzo(a)pyrene, into carcinogenic compounds.

The cytochrome P450s require, for their function, the involvement of a reductase. The reductases of a given plant efficiently reduce the P450s of another plant. The reduction occurs less efficiently between reductases and P450s of different phyla. It is impossible between plant reductases and bacterial P450s. The plant transformations carried out up until now with bacterial or animal P450s (48, 50) were carried out after alteration of the sequences to promote the reduction of the enzyme. CYP76B1 being a plant microsomal enzyme, which is easily reduced by the plant microsomal P450 reductases (see above), no alteration of its sequence should be necessary in order to obtain a completely functional enzyme.

Plants being sedentary, having a large surface area of contact with their surroundings, and being capable of accumulating certain metals or organic compounds, they constitute a material more suited to the detection of environmental pollution. In a bioremediation perspective, i.e. soils or waters contaminated by organic pollutants, it is also possible to envisage producing transgenic plants overexpressing CYP76B1. The accumulation of deactivated residues in the aerial parts would allow their elimination by cutting and incineration.

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›Example 12 · 3 of 5

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49. Shiota.N., Inui, H. and Okhawa, H. (1996) Pestic. biochem. Physiol. 54, 190-198.

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›Example 12 · 4 of 5

gtgacacaca cacaccatct aata atg gat ttt ctt ata ata gtg agt act 51

Met Asp Phe Leu Ile Ile Val Ser Thr

1 5

ctt ctc tta tct tac ata ctt atc tgg gtt ttg ggg gta ggc aaa ccc 99

Leu Leu Leu Ser Tyr Ile Leu Ile Trp Val Leu Gly Val Gly Lys Pro

10 15 20 25

aag aac tta cct cca ggc cca aca cgg ttg ccg atc ata gga aac ctc 147

Lys Asn Leu Pro Pro Gly Pro Thr Arg Leu Pro Ile Ile Gly Asn Leu

30 35 40

cac ttg ctg gga gcg tta ccg cac cag tcg cta gcg aaa cta gcc aaa 195

His Leu Leu Gly Ala Leu Pro His Gln Ser Leu Ala Lys Leu Ala Lys

45 50 55

att cat ggc ccg ata atg tct tta caa ctc ggt cag atc acc acg ctc 243

Ile His Gly Pro Ile Met Ser Leu Gln Leu Gly Gln Ile Thr Thr Leu

60 65 70

gtc ata tcc tca gct act gcc gcg gaa gaa gta ctc aaa aag caa gac 291

Val Ile Ser Ser Ala Thr Ala Ala Glu Glu Val Leu Lys Lys Gln Asp

75 80 85

ctt gct ttc tcc aca cgt aat gtc cct gac gca gtg cgt gcc tat aac 339

Leu Ala Phe Ser Thr Arg Asn Val Pro Asp Ala Val Arg Ala Tyr Asn

90 95 100 105

cac gag cga cac tcc atc tca ttt ctc cat gtg tgc aca gag tgg cgc 387

His Glu Arg His Ser Ile Ser Phe Leu His Val Cys Thr Glu Trp Arg

110 115 120

acc ctc aga agg atc gtt agt tcc aat atc ttc tcc aac agc tct ctt 435

Thr Leu Arg Arg Ile Val Ser Ser Asn Ile Phe Ser Asn Ser Ser Leu

125 130 135

gaa gcc aaa cag cac ttg agg agc aag aaa gtt gaa gag cta ata gca 483

Glu Ala Lys Gln His Leu Arg Ser Lys Lys Val Glu Glu Leu Ile Ala

140 145 150

tac tgc cgg aaa gct gct ctt tcg aat gaa aat gtg cac atc ggt cgt 531

Tyr Cys Arg Lys Ala Ala Leu Ser Asn Glu Asn Val His Ile Gly Arg

155 160 165

gct gca ttt aga acc tcg ttg aat ctt tta tcc aac act att ttc tcc 579

Ala Ala Phe Arg Thr Ser Leu Asn Leu Leu Ser Asn Thr Ile Phe Ser

170 175 180 185

aaa gat tta aca gac ccg tat gag gat tca ggt aaa gag ttt agg gag 627

Lys Asp Leu Thr Asp Pro Tyr Glu Asp Ser Gly Lys Glu Phe Arg Glu

190 195 200

gtg att acc aac att atg gtg gac tct gca aag aca aat ctt gtt gac 675

Val Ile Thr Asn Ile Met Val Asp Ser Ala Lys Thr Asn Leu Val Asp

205 210 215

gta ttt cca gtg ttg aag aag att gat cca caa ggg atc aag aga gga 723

Val Phe Pro Val Leu Lys Lys Ile Asp Pro Gln Gly Ile Lys Arg Gly

220 225 230

atg gct cgt cat ttt tcc aag gtt ctt ggg ata ttt gat cag tta att 771

Met Ala Arg His Phe Ser Lys Val Leu Gly Ile Phe Asp Gln Leu Ile

235 240 245

gaa gag aga atg aga acg ggc aga ttc gaa caa ggt gat gta ttg gac 819

Glu Glu Arg Met Arg Thr Gly Arg Phe Glu Gln Gly Asp Val Leu Asp

250 255 260 265

gtg tgt ttg aaa atg atg caa gat aac cca aat gag ttc aat cac aca 867

Val Cys Leu Lys Met Met Gln Asp Asn Pro Asn Glu Phe Asn His Thr

270 275 280

aac ata aag gct ttg ttt ttg gat ttg ttt gtt gct ggc act gat aca 915

Asn Ile Lys Ala Leu Phe Leu Asp Leu Phe Val Ala Gly Thr Asp Thr

285 290 295

acc tcg att aca ata gaa tgg gcg atg aca gaa cta cta cgc aaa cca 963

Thr Ser Ile Thr Ile Glu Trp Ala Met Thr Glu Leu Leu Arg Lys Pro

300 305 310

cac atc atg agt aaa gcg aaa gag gag ctt gaa aaa gtt att ggt aaa 1011

His Ile Met Ser Lys Ala Lys Glu Glu Leu Glu Lys Val Ile Gly Lys

315 320 325

ggt agt atc gta aaa gag gat gat gta ttg agg cta ccc tac tta tca 1059

Gly Ser Ile Val Lys Glu Asp Asp Val Leu Arg Leu Pro Tyr Leu Ser

330 335 340 345

tgc att gtg aaa gaa gtc tta cga ctg cac ccg cca tcc ccc tta ctt 1107

Cys Ile Val Lys Glu Val Leu Arg Leu His Pro Pro Ser Pro Leu Leu

350 355 360

ctt cca cga aaa gtt gtg aca cag gta gaa ctc agt gga tac act ata 1155

Leu Pro Arg Lys Val Val Thr Gln Val Glu Leu Ser Gly Tyr Thr Ile

365 370 375

cca gcg ggc aca ctg gtg ttt gtg aat gca tgg gcc ata gga aga gac 1203

Pro Ala Gly Thr Leu Val Phe Val Asn Ala Trp Ala Ile Gly Arg Asp

380 385 390

cca acc gta tgg gat gac tca cta gag ttc aag cca caa cga ttt ttg 1251

Pro Thr Val Trp Asp Asp Ser Leu Glu Phe Lys Pro Gln Arg Phe Leu

395 400 405

gag tcc agg ctt gat gtc cga ggt cat gat ttc gat tta atc ccg ttt 1299

Glu Ser Arg Leu Asp Val Arg Gly His Asp Phe Asp Leu Ile Pro Phe

410 415 420 425

ggt gct gga cga aga ata tgc cct ggc ata cca ctt gca aca cgt atg 1347

Gly Ala Gly Arg Arg Ile Cys Pro Gly Ile Pro Leu Ala Thr Arg Met

430 435 440

gtc cct atc atg ttg ggc tca tta ctc aat aat ttt gac tgg aaa att 1395

Val Pro Ile Met Leu Gly Ser Leu Leu Asn Asn Phe Asp Trp Lys Ile

445 450 455

gac act aag gtt cca tat gat gtt ttg gac atg act gag aaa aat gga 1443

Asp Thr Lys Val Pro Tyr Asp Val Leu Asp Met Thr Glu Lys Asn Gly

460 465 470

acc act ata tcc aag gcc aaa cct ctg tgt gtt gtt cca ata cca ttg 1491

Thr Thr Ile Ser Lys Ala Lys Pro Leu Cys Val Val Pro Ile Pro Leu

475 480 485

aac tagcatccat tcatcttgtt tgaagtccga taatcaagcg caaccgagtt 1544

Asn

490

ggaagaagaa gaaaaaacgc agcaaccttt tatttgttta tttattagtc taatgggtca 1604

aattgtttac tgtttatatt ttatttagaa cttggccgta ggccatgtcc agtgggtcaa 1664

acaattagtt gtccagtagg gttaatatta tgtaatttgc ttttgggccc taacatgtga 1724

accggttgtt ggc 1737

tgg gtt ttg ggg gta ggc aaa ccc aag aac tta cct cca ggc cca aca 48

Trp Val Leu Gly Val Gly Lys Pro Lys Asn Leu Pro Pro Gly Pro Thr

1 5 10 15

cgg ttg ccg atc ata gga aac ctc cac ttg ctt gga gcg tta ccg cac 96

Arg Leu Pro Ile Ile Gly Asn Leu His Leu Leu Gly Ala Leu Pro His

20 25 30

cag tcg cta gcg aaa cta gcc aaa att cat ggc ccg ata atg tct tta 144

Gln Ser Leu Ala Lys Leu Ala Lys Ile His Gly Pro Ile Met Ser Leu

35 40 45

caa ctc ggt cag atc acc acg ctc gtc ata tcc tca gcc act gcc gcg 192

Gln Leu Gly Gln Ile Thr Thr Leu Val Ile Ser Ser Ala Thr Ala Ala

50 55 60

gaa gaa gta ctc aaa aag caa gac ctt gct ttc tcc aca cgt aat gtc 240

Glu Glu Val Leu Lys Lys Gln Asp Leu Ala Phe Ser Thr Arg Asn Val

65 70 75 80

cct gac gcg gtg cgt gcc tat aac cac gag cga cac tcc atc tca ttt 288

Pro Asp Ala Val Arg Ala Tyr Asn His Glu Arg His Ser Ile Ser Phe

85 90 95

ctc cat gtg tgc acg gag tgg cgc acc ctc aga agg att gtt agt tcc 336

Leu His Val Cys Thr Glu Trp Arg Thr Leu Arg Arg Ile Val Ser Ser

100 105 110

aat atc ttc tcc aac agc tct ctt gaa gcc aaa cag cac ttg agg agc 384

Asn Ile Phe Ser Asn Ser Ser Leu Glu Ala Lys Gln His Leu Arg Ser

115 120 125

aag aaa gtt gaa gag cta ata gca tac tgc cgg aaa gct gct ctt tcg 432

Lys Lys Val Glu Glu Leu Ile Ala Tyr Cys Arg Lys Ala Ala Leu Ser

130 135 140

aat gaa aat gtg cac atc ggt cgt gct gca ttt aga acc tcg ttg aat 480

Asn Glu Asn Val His Ile Gly Arg Ala Ala Phe Arg Thr Ser Leu Asn

›Example 12 · 5 of 5

145 150 155 160

ctt tta tcc aac act att ttc tcc aag gat tta aca gac ccg tat gag 528

Leu Leu Ser Asn Thr Ile Phe Ser Lys Asp Leu Thr Asp Pro Tyr Glu

165 170 175

gat tca gct tca ggt aaa gag ttt agg gag gtg att acc aac att atg 576

Asp Ser Ala Ser Gly Lys Glu Phe Arg Glu Val Ile Thr Asn Ile Met

180 185 190

gtg gac tct gca aag aca aat ctt gtt gac gta ttt cca gtg ttg aag 624

Val Asp Ser Ala Lys Thr Asn Leu Val Asp Val Phe Pro Val Leu Lys

195 200 205

agg att gat cca caa ggg atc aag aga gga atg gct cgt cat ttt tcc 672

Arg Ile Asp Pro Gln Gly Ile Lys Arg Gly Met Ala Arg His Phe Ser

210 215 220

aag gtt ctt ggg ata ttt gat cag tta att gaa gag aga atg aga acg 720

Lys Val Leu Gly Ile Phe Asp Gln Leu Ile Glu Glu Arg Met Arg Thr

225 230 235 240

ggc aga ttc gaa caa ggt gat gta ttg gac gtg tgt ttg aaa atg atg 768

Gly Arg Phe Glu Gln Gly Asp Val Leu Asp Val Cys Leu Lys Met Met

245 250 255

caa gat aac cca aat gag ttc aat cac aca aac ata aag gct ttg ttt 816

Gln Asp Asn Pro Asn Glu Phe Asn His Thr Asn Ile Lys Ala Leu Phe

260 265 270

ttg gat ttg ttt gtt gct ggc act gat aca acc tcg att aca ata gaa 864

Leu Asp Leu Phe Val Ala Gly Thr Asp Thr Thr Ser Ile Thr Ile Glu

275 280 285

tgg gcg atg aca gaa cta cta cgc aaa cca cac atc atg agt aaa gcg 912

Trp Ala Met Thr Glu Leu Leu Arg Lys Pro His Ile Met Ser Lys Ala

290 295 300

aaa gag gag ctt gaa aaa gtt att ggt aaa ggt agt atc gta aaa gag 960

Lys Glu Glu Leu Glu Lys Val Ile Gly Lys Gly Ser Ile Val Lys Glu

305 310 315 320

gat gat gta ttg agg cta ccc tac tta tca tgc att gtg aaa gaa gtc 1008

Asp Asp Val Leu Arg Leu Pro Tyr Leu Ser Cys Ile Val Lys Glu Val

325 330 335

tta cga ctg cac ccg cca tcc ccc tta ctt ctt cca cga aaa gtt gtg 1056

Leu Arg Leu His Pro Pro Ser Pro Leu Leu Leu Pro Arg Lys Val Val

340 345 350

aca cag gta gaa ctc agt gga tac act ata cca gcg ggc aca ctg gtg 1104

Thr Gln Val Glu Leu Ser Gly Tyr Thr Ile Pro Ala Gly Thr Leu Val

355 360 365

ttt gtg aat gca tgg gct ata gga aga gac cca acc gta tgg gat gac 1152

Phe Val Asn Ala Trp Ala Ile Gly Arg Asp Pro Thr Val Trp Asp Asp

370 375 380

tca cta gag ttc aag cca caa cga ttt ttg gag tcc agg ctt gat gtc 1200

Ser Leu Glu Phe Lys Pro Gln Arg Phe Leu Glu Ser Arg Leu Asp Val

385 390 395 400

cga ggt cat gat ttc gat tta atc ccg ttt ggt gct gga cga aga ata 1248

Arg Gly His Asp Phe Asp Leu Ile Pro Phe Gly Ala Gly Arg Arg Ile

405 410 415

tgc cct ggc ata cca ctt gca aca cgt atg gtc cct atc atg ttg ggc 1296

Cys Pro Gly Ile Pro Leu Ala Thr Arg Met Val Pro Ile Met Leu Gly

420 425 430

tca tta ctc aat aat ttt gac tgg aaa att gac act aag gtt cca tat 1344

Ser Leu Leu Asn Asn Phe Asp Trp Lys Ile Asp Thr Lys Val Pro Tyr

435 440 445

gat gtt ttg gac atg act gag aaa aat gga acc act ata tcc aag gcc 1392

Asp Val Leu Asp Met Thr Glu Lys Asn Gly Thr Thr Ile Ser Lys Ala

450 455 460

aaa cct ctg tgt gtt gtt cca ata cca ttg aac tagcatccat tcatcttgtt 1445

Lys Pro Leu Cys Val Val Pro Ile Pro Leu Asn

465 470 475

tgaagtccga taatcaagcg caaccgagtt cgaagaagaa gaaaaaacgc agcagccttt 1505

tatttgttta tttattagtc taatgggtca aattgtttac tgtttatatt ttatttagaa 1565

cttgggccgt aggccatgtc cagtgggtca aacaattagt agtccagtag ggttaatatt 1625

atgtaattt 1634

›DNA

Artificial Sequence

Description of Artificial Sequence Sense

primer derived from Helianthus tuberosus CYP76B1 nucleic acid

sequence.

atatatggat ccatggattt tcttataata gtgagtac 38

›DNA

Artificial Sequence

Description of Artificial Sequence Reverse

primer derived from Helianthus tuberosus CYP76B1 nucleic acid

sequence

tatatagaat tcatgctagt tcaatggtat tggaacaaca c 41

›PRT

Helianthus tuberosus

Met Glu Leu His Leu Ser Leu Thr Ile Ala Thr Phe

1 5 10

›DNA

Artificial Sequence

Description of Artificial Sequence Sense

primer derived from Helianthus tuberosus cytochrome P450

polypeptide coding sequence.

ggarytncay ytnwsnytna cnatygc 27

›PRT

Helianthus tuberosus

Ile Gln His Tyr Glu Leu Leu Pro Phe Gly Ser Gly Arg

1 5 10

›PRT

Helianthus tuberosus

Gly Gln Glu Tyr Glu Leu Leu Pro Phe Gly Ser Gly Arg

1 5 10

›DNA

Artificial Sequence

Description of Artificial Sequence Reverse

primer derived form Helianthus tuberosus cytochrome P450

polypeptide coding sequence

cgnccnganc craangg 17

›DNA

Artificial Sequence

Description of Artificial Sequence Reverse

primer derived from Helianthus tuberosus cytochrome P450

polypeptide coding sequence

aanggnarna rytcrtartg 20

›DNA

Artificial Sequence

Description of Artificial Sequence Reverse

primer derived from Helianthus tuberosus cytochrome P450

polypeptide coding sequence

aanggnarna rytcrtaytc 20

›PRT

Helianthus tuberosus

Asn Met Pro Phe Ile Leu Leu Tyr Ile Ala Val Leu

1 5 10

›DNA

Artificial Sequence

Description of Artificial Sequence Sense

primer derived from Helianthus uberosus cytochrome 450 polypeptide

coding sequence

ttyathytny tntayatygc 20

›PRT

Helianthus tuberosus

Gln Glu Glu Leu Asp Leu His Val Gly Arg

1 5 10

›DNA

Artificial Sequence

Description of Artificial Sequence Sense

primer derived from Helianthus tuberosus cytochrome P450

polypeptide coding sequence

ccrgargary tngayytnca y 21

490

›PRT

Helianthus tuberosus

Met Asp Phe Leu Ile Ile Val Ser Thr Leu Leu Leu Ser Tyr Ile Leu

1 5 10 15

Ile Trp Val Leu Gly Val Gly Lys Pro Lys Asn Leu Pro Pro Gly Pro

20 25 30

Thr Arg Leu Pro Ile Ile Gly Asn Leu His Leu Leu Gly Ala Leu Pro

35 40 45

His Gln Ser Leu Ala Lys Leu Ala Lys Ile His Gly Pro Ile Met Ser

50 55 60

Leu Gln Leu Gly Gln Ile Thr Thr Leu Val Ile Ser Ser Ala Thr Ala

65 70 75 80

Ala Glu Glu Val Leu Lys Lys Gln Asp Leu Ala Phe Ser Thr Arg Asn

85 90 95

Val Pro Asp Ala Val Arg Ala Tyr Asn His Glu Arg His Ser Ile Ser

100 105 110

Phe Leu His Val Cys Thr Glu Trp Arg Thr Leu Arg Arg Ile Val Ser

115 120 125

Ser Asn Ile Phe Ser Asn Ser Ser Leu Glu Ala Lys Gln His Leu Arg

130 135 140

Ser Lys Lys Val Glu Glu Leu Ile Ala Tyr Cys Arg Lys Ala Ala Leu

145 150 155 160

Ser Asn Glu Asn Val His Ile Gly Arg Ala Ala Phe Arg Thr Ser Leu

165 170 175

Asn Leu Leu Ser Asn Thr Ile Phe Ser Lys Asp Leu Thr Asp Pro Tyr

180 185 190

Glu Asp Ser Gly Lys Glu Phe Arg Glu Val Ile Thr Asn Ile Met Val

195 200 205

Asp Ser Ala Lys Thr Asn Leu Val Asp Val Phe Pro Val Leu Lys Lys

210 215 220

Ile Asp Pro Gln Gly Ile Lys Arg Gly Met Ala Arg His Phe Ser Lys

225 230 235 240

Val Leu Gly Ile Phe Asp Gln Leu Ile Glu Glu Arg Met Arg Thr Gly

245 250 255

Arg Phe Glu Gln Gly Asp Val Leu Asp Val Cys Leu Lys Met Met Gln

260 265 270

Asp Asn Pro Asn Glu Phe Asn His Thr Asn Ile Lys Ala Leu Phe Leu

275 280 285

Asp Leu Phe Val Ala Gly Thr Asp Thr Thr Ser Ile Thr Ile Glu Trp

290 295 300

Ala Met Thr Glu Leu Leu Arg Lys Pro His Ile Met Ser Lys Ala Lys

305 310 315 320

Glu Glu Leu Glu Lys Val Ile Gly Lys Gly Ser Ile Val Lys Glu Asp

325 330 335

Asp Val Leu Arg Leu Pro Tyr Leu Ser Cys Ile Val Lys Glu Val Leu

340 345 350

Arg Leu His Pro Pro Ser Pro Leu Leu Leu Pro Arg Lys Val Val Thr

355 360 365

Gln Val Glu Leu Ser Gly Tyr Thr Ile Pro Ala Gly Thr Leu Val Phe

370 375 380

Val Asn Ala Trp Ala Ile Gly Arg Asp Pro Thr Val Trp Asp Asp Ser

385 390 395 400

Leu Glu Phe Lys Pro Gln Arg Phe Leu Glu Ser Arg Leu Asp Val Arg

405 410 415

Gly His Asp Phe Asp Leu Ile Pro Phe Gly Ala Gly Arg Arg Ile Cys

420 425 430

Pro Gly Ile Pro Leu Ala Thr Arg Met Val Pro Ile Met Leu Gly Ser

435 440 445

Leu Leu Asn Asn Phe Asp Trp Lys Ile Asp Thr Lys Val Pro Tyr Asp

450 455 460

Val Leu Asp Met Thr Glu Lys Asn Gly Thr Thr Ile Ser Lys Ala Lys

465 470 475 480

Pro Leu Cys Val Val Pro Ile Pro Leu Asn

485 490

467

›PRT

Solanum melongena

Phe Gly Asn Met Phe Asp Leu Ala Gly Ser Ala Pro Tyr Lys Lys Ile

1 5 10 15

Ala Cys Leu Lys Glu Lys Tyr Gly Pro Ile Leu Trp Leu Lys Ile Gly

20 25 30

Ser Ser Met Asn Thr Met Val Ile Gln Thr Ala Asn Ser Ala Ser Glu

35 40 45

Leu Phe Arg Asn His Asp Val Ser Phe Ser Asp Arg Pro Ile Val Asp

50 55 60

Val Asn Leu Ala His Asn Tyr Tyr Lys Gly Ser Met Ala Leu Ala Pro

65 70 75 80

Tyr Gly Asn Tyr Trp Arg Phe Ser Arg Arg Ile Cys Thr Val Glu Met

85 90 95

Phe Val His Lys Arg Ile Asn Glu Thr Thr Asn Ile Arg Gln Glu Ser

100 105 110

Val Asp Lys Met Leu Arg Leu Asp Glu Glu Lys Ala Ser Ser Ser Gly

115 120 125

Gly Gly Gly Glu Gly Ile Glu Val Thr Arg Tyr Met Phe Leu Ala Ser

130 135 140

Phe Asn Met Val Gly Asn Met Ile Phe Ser Lys Asp Leu Val Thr Asp

145 150 155 160

Pro Glu Ser Lys Gln Gly Ser Glu Phe Phe Asn Ala Met Ile Gly Ile

165 170 175

Met Glu Trp Ala Gly Val Pro Asn Ile Ser Asp Ile Phe Pro Cys Leu

180 185 190

Lys Met Phe Asp Val Gln Gly Leu Arg Lys Lys Met Glu Arg Asp Met

195 200 205

Gly Lys Gly Lys Glu Ile Thr Lys Lys Phe Ile Glu Glu Arg Ile Glu

210 215 220

Glu Arg Lys Lys Gly Glu Lys Asn Arg Ser Ile Lys Asp Leu Leu Asp

225 230 235 240

Val Leu Ile Asp Phe Glu Gly Ser Gly Lys Asp Glu Pro Asp Lys Leu

245 250 255

Ser Glu Asp Glu Ile Ile Val Ile Ile Leu Glu Met Phe Leu Ala Gly

260 265 270

Thr Glu Thr Thr Ser Ser Ser Val Glu Trp Ala Leu Thr Glu Leu Leu

275 280 285

Arg His Pro Gln Ala Met Ala Lys Val Lys Leu Glu Ile Leu Gln Val

290 295 300

Ile Gly Pro Asn Lys Lys Phe Glu Glu Cys Asp Ile Asp Ser Leu Pro

305 310 315 320

Tyr Val Gln Ala Val Leu Lys Glu Gln Leu Arg Leu His Pro Pro Leu

325 330 335

Pro Leu Leu Ile Pro Arg Lys Ala Ile Gln Asp Thr Lys Phe Met Gly

340 345 350

Tyr Asp Ile Pro Lys Gly Thr Gln Val Leu Val Asn Ala Trp Ala Ile

355 360 365

Gly Arg Asp Pro Glu Tyr Trp Asp Asn Pro Phe Glu Phe Lys Pro Glu

370 375 380

Arg Phe Leu Glu Ser Lys Val Asp Val Lys Gly Gln Asn Tyr Glu Leu

385 390 395 400

Ile Pro Phe Gly Ala Gly Arg Arg Met Cys Val Gly Leu Pro Leu Gly

405 410 415

His Arg Met Met His Phe Thr Phe Gly Ser Leu Leu His Glu Phe Asp

420 425 430

Trp Glu Leu Pro His Asn Val Ser Pro Lys Ser Ile Asn Met Glu Glu

435 440 445

Ser Met Gly Ile Thr Ala Arg Lys Lys Gln Pro Leu Lys Val Ile Pro

450 455 460

Lys Lys Ala

465

504

›PRT

Solanum melongena

Met Glu Trp Glu Trp Ser Tyr Val Phe Phe Ser Ala Ile Ile Ile Leu

1 5 10 15

Pro Ala Phe Ile Leu Phe Phe Ser Gln Lys Asn Thr Thr Lys Ser Ser

20 25 30

Tyr Arg Pro Pro Gly Pro Pro Gly Leu Pro Ile Phe Gly Asn Met Phe

35 40 45

Glu Leu Gly Thr Glu Pro Tyr Lys Lys Met Ala Val Leu Arg Gln Lys

50 55 60

Tyr Gly Pro Val Leu Trp Leu Lys Glu Gly Ser Thr Tyr Thr Met Val

65 70 75 80

Val Gln Thr Ala Gln Ala Ser Glu Glu Leu Phe Lys Asn His Asp Ile

85 90 95

Ser Phe Ala Asn Arg Val Ile Pro Asp Val Asn Gln Ala His Ser Tyr

100 105 110

Tyr Gln Gly Ser Leu Ala Ile Ala Pro Tyr Gly Pro Phe Trp Arg Phe

115 120 125

Gln Arg Arg Ile Cys Thr Ile Glu Met Phe Val His Lys Lys Ile Ser

130 135 140

Glu Thr Glu Pro Val Arg Arg Lys Cys Val Asp Asn Met Leu Lys Trp

145 150 155 160

Ile Glu Lys Glu Ala Asn Ser Ala Glu Lys Gly Ser Gly Ile Glu Val

165 170 175

Thr Arg Phe Val Phe Leu Ala Ser Phe Asn Met Leu Gly Asn Leu Ile

180 185 190

Leu Ser Lys Asp Leu Ala Asp Leu Glu Ser Glu Glu Ala Ser Glu Phe

195 200 205

Phe Ile Ala Met Lys Arg Ile Asn Glu Trp Ser Gly Ile Ala Asn Val

210 215 220

Ser Asp Ile Phe Pro Phe Leu Lys Lys Phe Asp Leu Gln Ser Leu Arg

225 230 235 240

Lys Lys Met Ala Arg Asp Met Gly Lys Ala Val Glu Ile Met Ser Met

245 250 255

Phe Leu Lys Glu Arg Glu Glu Glu Arg Lys Lys Gly Thr Glu Lys Gly

260 265 270

Lys Asp Phe Leu Asp Val Leu Leu Glu Phe Gln Gly Thr Gly Lys Asp

275 280 285

Glu Pro Ala Lys Leu Ser Glu His Glu Ile Lys Ile Phe Val Leu Glu

290 295 300

Met Phe Leu Ala Gly Thr Glu Thr Thr Ser Ser Ser Val Glu Trp Ala

305 310 315 320

Leu Thr Glu Leu Leu Arg His Pro Glu Ala Met Ala Lys Val Lys Thr

325 330 335

Glu Ile Ser Gln Ala Ile Glu Pro Asn Arg Lys Phe Glu Asp Ser Asp

340 345 350

Ile Glu Asn Leu Pro Tyr Met Gln Ala Val Leu Lys Glu Ser Leu Arg

355 360 365

Leu His Pro Pro Leu Pro Phe Leu Ile Pro Arg Glu Thr Ile Gln Asp

370 375 380

Thr Lys Phe Met Gly Tyr Asp Val Pro Lys Asp Thr Gln Val Leu Val

385 390 395 400

Asn Ala Trp Ala Ile Gly Arg Asp Pro Glu Cys Trp Asp Asp Pro Met

405 410 415

Ser Phe Lys Pro Glu Arg Phe Leu Gly Ser Lys Ile Asp Val Lys Gly

420 425 430

Gln His Tyr Gly Leu Ile Pro Phe Gly Ala Gly Arg Arg Met Cys Val

435 440 445

Gly Leu Pro Leu Gly His Arg Met Met His Phe Ala Leu Gly Ser Leu

450 455 460

Leu Arg Glu Phe Glu Trp Glu Leu Pro Asp Gly Val Ser Pro Lys Ser

465 470 475 480

Ile Asn Met Asp Gly Ser Met Gly Val Thr Ala Arg Lys Arg Asp Ser

485 490 495

Leu Lys Val Ile Pro Lys Lys Ala

500

508

›PRT

Petunia x hybrida

Met Val Leu Leu Ser Glu Leu Ala Ala Ala Thr Leu Ile Phe Leu Thr

1 5 10 15

Thr His Ile Phe Ile Ser Thr Leu Leu Ser Ile Thr Asn Gly Arg Arg

20 25 30

Leu Pro Pro Gly Pro Arg Gly Trp Pro Val Ile Gly Ala Leu Pro Leu

35 40 45

Leu Gly Ala Met Pro His Val Ser Leu Ala Lys Met Ala Lys Lys Tyr

50 55 60

Gly Ala Ile Met Tyr Leu Lys Val Gly Thr Cys Gly Met Val Val Ala

65 70 75 80

Ser Thr Pro Asp Ala Ala Lys Ala Phe Leu Lys Thr Leu Asp Leu Asn

85 90 95

Phe Ser Asn Arg Pro Pro Asn Ala Gly Ala Thr His Leu Ala Tyr Gly

100 105 110

Ala Gln Asp Met Val Phe Ala His Tyr Gly Pro Arg Trp Lys Leu Leu

115 120 125

Arg Lys Leu Ser Asn Leu His Met Leu Gly Gly Lys Ala Leu Glu Asn

130 135 140

Trp Ala Asn Val Arg Ala Asn Glu Leu Gly His Met Leu Lys Ser Met

145 150 155 160

Phe Asp Met Ser Arg Glu Gly Glu Arg Val Val Val Ala Glu Met Leu

165 170 175

Thr Phe Ala Met Ala Asn Met Ile Gly Gln Val Ile Leu Ser Lys Arg

180 185 190

Val Phe Val Asn Lys Gly Val Glu Val Asn Glu Phe Lys Asp Met Val

195 200 205

Val Glu Leu Met Thr Thr Ala Gly Tyr Phe Asn Ile Gly Asp Phe Ile

210 215 220

Pro Cys Leu Ala Trp Met Asp Leu Gln Gly Ile Glu Lys Gly Met Lys

225 230 235 240

Arg Leu His Lys Lys Phe Asp Ala Leu Leu Thr Arg Met Phe Asp Glu

245 250 255

His Lys Ala Thr Ser Tyr Glu Arg Lys Gly Lys Pro Asp Phe Leu Asp

260 265 270

Cys Val Met Glu Asn Arg Asp Asn Ser Glu Gly Glu Arg Leu Ser Thr

275 280 285

Thr Asn Ile Lys Ala Leu Leu Leu Asn Leu Phe Thr Ala Gly Thr Asp

290 295 300

Thr Ser Ser Ser Ala Ile Glu Trp Ala Leu Ala Glu Met Met Lys Asn

305 310 315 320

Pro Ala Ile Leu Lys Lys Ala Gln Gly Glu Met Asp Gln Val Ile Gly

325 330 335

Asn Asn Arg Arg Leu Leu Glu Ser Asp Ile Pro Asn Leu Pro Tyr Leu

340 345 350

Arg Ala Ile Cys Lys Glu Thr Phe Arg Lys His Pro Ser Thr Pro Leu

355 360 365

Asn Leu Pro Arg Ile Ser Asn Glu Pro Cys Ile Val Asp Gly Tyr Tyr

370 375 380

Thr Pro Lys Asn Thr Arg Leu Ser Val Asn Ile Trp Ala Ile Gly Arg

385 390 395 400

Asp Pro Glu Val Trp Glu Asn Pro Leu Glu Phe Tyr Pro Glu Arg Phe

405 410 415

Leu Ser Gly Arg Asn Ser Lys Ile Asp Pro Arg Gly Asn Asp Phe Glu

420 425 430

Leu Ile Pro Phe Gly Ala Gly Arg Arg Ile Cys Ala Gly Thr Arg Met

435 440 445

Gly Ile Val Met Val Glu Tyr Ile Leu Gly Ile Leu Val His Ser Phe

450 455 460

Asp Trp Lys Leu Pro Ser Glu Val Ile Glu Leu Asn Met Glu Glu Ala

465 470 475 480

Phe Gly Leu Ala Leu Gln Lys Ala Val Pro Leu Glu Ala Met Val Ile

485 490 495

Pro Arg Leu Pro Ile Asp Val Tyr Ala Pro Leu Ala

500 505

471

›PRT

Persea americana

Met Ala Ile Leu Val Ser Leu Leu Phe Leu Ala Ile Ala Leu Thr Phe

1 5 10 15

Phe Leu Leu Lys Leu Asn Glu Lys Arg Glu Lys Lys Pro Asn Leu Pro

20 25 30

Pro Ser Pro Pro Asn Leu Pro Ile Ile Gly Asn Leu His Gln Leu Gly

35 40 45

Asn Leu Pro His Arg Ser Leu Arg Ser Leu Ala Asn Glu Leu Gly Pro

50 55 60

Leu Ile Leu Leu His Leu Gly His Ile Pro Thr Leu Ile Val Ser Thr

65 70 75 80

Ala Glu Ile Ala Glu Glu Ile Leu Lys Thr His Asp Leu Ile Phe Ala

85 90 95

Ser Arg Pro Ser Thr Thr Ala Ala Arg Arg Ile Phe Tyr Asp Cys Thr

100 105 110

Asp Val Ala Phe Ser Pro Tyr Gly Glu Tyr Trp Arg Gln Val Arg Lys

115 120 125

Ile Cys Val Leu Glu Leu Leu Ser Ile Lys Arg Val Asn Ser Tyr Arg

130 135 140

Ser Ile Arg Glu Glu Glu Val Gly Leu Met Met Glu Arg Ile Ser Gln

145 150 155 160

Ser Cys Ser Thr Gly Glu Ala Val Asn Leu Ser Glu Leu Leu Leu Leu

165 170 175

Leu Ser Ser Gly Thr Ile Thr Arg Val Ala Phe Gly Lys Lys Tyr Glu

180 185 190

Gly Glu Glu Glu Arg Lys Asn Lys Phe Ala Asp Leu Ala Thr Glu Leu

195 200 205

Thr Thr Leu Met Gly Ala Phe Phe Val Gly Asp Tyr Phe Pro Ser Phe

210 215 220

Ala Trp Val Asp Val Leu Thr Gly Met Asp Ala Arg Leu Lys Arg Asn

225 230 235 240

His Gly Glu Leu Asp Ala Phe Val Asp His Val Ile Asp Asp His Leu

245 250 255

Leu Ser Arg Lys Ala Asn Gly Ser Asp Gly Val Glu Gln Lys Asp Leu

260 265 270

Val Asp Val Leu Leu His Leu Gln Lys Asp Ser Ser Leu Gly Val His

275 280 285

Leu Asn Arg Asn Asn Leu Lys Ala Val Ile Leu Asp Met Phe Ser Gly

290 295 300

Gly Thr Asp Thr Thr Ala Val Ile Leu Glu Trp Ala Met Ala Glu Leu

305 310 315 320

Ile Lys His Pro Asp Val Met Glu Lys Ala Gln Gln Glu Val Arg Arg

325 330 335

Val Val Gly Lys Lys Ala Lys Val Glu Glu Glu Asp Leu His Gln Leu

340 345 350

His Tyr Leu Lys Leu Ile Ile Lys Glu Thr Leu Arg Leu His Pro Val

355 360 365

Ala Pro Leu Leu Val Pro Arg Glu Ser Thr Arg Asp Val Val Ile Arg

370 375 380

Gly Tyr His Ile Pro Ala Lys Thr Arg Val Phe Ile Asn Ala Trp Ala

385 390 395 400

Ile Gly Arg Asp Pro Lys Ser Trp Glu Asn Ala Glu Glu Phe Leu Pro

405 410 415

Glu Arg Phe Val Asn Asn Ser Val Asp Phe Lys Gly Gln Asp Phe Gln

420 425 430

Leu Ile Pro Phe Gly Ala Gly Arg Arg Gly Cys Pro Gly Ile Ala Phe

435 440 445

Gly Ile Ser Ser Val Glu Ile Ser Leu Ala Asn Leu Leu Tyr Trp Phe

450 455 460

Asn Trp Glu Leu Pro Gly Ile

465 470

487

›PRT

Berberis stolonifera

Met Asp Tyr Ile Val Gly Phe Val Ser Ile Ser Leu Val Ala Leu Leu

1 5 10 15

Tyr Phe Leu Leu Phe Lys Pro Lys His Thr Asn Leu Pro Pro Ser Pro

20 25 30

Pro Ala Trp Pro Ile Val Gly His Leu Pro Asp Leu Ile Ser Lys Asn

35 40 45

Ser Pro Pro Phe Leu Asp Tyr Met Ser Asn Ile Ala Gln Lys Tyr Gly

50 55 60

Pro Leu Ile His Leu Lys Phe Gly Leu His Ser Ser Ile Phe Ala Ser

65 70 75 80

Thr Lys Glu Ala Ala Met Glu Val Leu Gln Thr Asn Asp Lys Val Leu

85 90 95

Ser Gly Arg Gln Pro Leu Pro Cys Phe Arg Ile Lys Pro His Ile Asp

100 105 110

Tyr Ser Ile Leu Trp Ser Asp Ser Asn Ser Tyr Trp Lys Lys Gly Arg

115 120 125

Lys Ile Leu His Thr Glu Ile Phe Ser Gln Lys Met Leu Gln Ala Gln

130 135 140

Glu Lys Asn Arg Glu Arg Val Ala Gly Asn Leu Val Asn Phe Ile Met

145 150 155 160

Thr Lys Val Gly Asp Val Val Glu Leu Arg Ser Trp Leu Phe Gly Cys

165 170 175

Ala Leu Asn Val Leu Gly His Val Val Phe Ser Asn Asp Val Phe Glu

180 185 190

Tyr Ser Asp Gln Ser Asp Glu Val Gly Met Asp Lys Leu Ile His Gly

195 200 205

Met Leu Met Thr Gly Gly Asp Phe Asp Val Ala Ser Tyr Phe Pro Val

210 215 220

Leu Ala Arg Phe Asp Leu His Gly Leu Lys Arg Lys Met Asp Glu Gln

225 230 235 240

Phe Lys Leu Leu Ile Lys Ile Trp Glu Gly Glu Val Leu Ala Arg Arg

245 250 255

Ala Asn Arg Asn Pro Glu Pro Lys Asp Met Leu Asp Val Leu Ile Ala

260 265 270

Asn Asp Phe Asn Glu His Gln Ile Asn Ala Met Phe Met Glu Thr Phe

275 280 285

Gly Pro Gly Ser Asp Thr Asn Ser Asn Ile Ile Glu Trp Ala Leu Ala

290 295 300

Gln Leu Ile Lys Asn Pro Asp Lys Leu Ala Lys Leu Arg Glu Glu Leu

305 310 315 320

Asp Arg Val Val Gly Arg Ser Ser Thr Val Lys Glu Ser His Phe Ser

325 330 335

Glu Leu Pro Tyr Leu Gln Ala Cys Val Lys Lys Thr Met Arg Leu Tyr

340 345 350

Pro Pro Ile Ser Ile Met Ile Pro His Arg Cys Met Glu Ile Cys Gln

355 360 365

Val Met Gly Tyr Thr Ile Pro Lys Gly Met Asp Val His Val Asn Ala

370 375 380

His Ala Ile Gly Arg Asp Pro Lys Asp Trp Lys Asp Pro Leu Lys Phe

385 390 395 400

Gln Pro Glu Arg Phe Leu Asp Ser Asp Ile Glu Tyr Asn Gly Lys Gln

405 410 415

Phe Gln Phe Ile Pro Phe Gly Ser Gly Arg Arg Ile Cys Pro Gly Arg

420 425 430

Pro Leu Ala Val Arg Ile Ile Pro Leu Val Leu Ala Ser Leu Val His

435 440 445

Ala Phe Gly Trp Glu Leu Pro Asp Gly Val Pro Asn Glu Lys Leu Asp

450 455 460

Met Glu Glu Leu Phe Thr Leu Ser Leu Cys Met Ala Lys Pro Leu Arg

465 470 475 480

Val Ile Pro Lys Val Arg Ile

485

505

›PRT

Helianthus tuberosus

Met Asp Leu Leu Leu Ile Glu Lys Thr Leu Val Ala Leu Phe Ala Ala

1 5 10 15

Ile Ile Gly Ala Ile Leu Ile Ser Lys Leu Arg Gly Lys Lys Phe Lys

20 25 30

Leu Pro Pro Gly Pro Ile Pro Val Pro Ile Phe Gly Asn Trp Leu Gln

35 40 45

Val Gly Asp Asp Leu Asn His Arg Asn Leu Thr Asp Leu Ala Lys Arg

50 55 60

Phe Gly Glu Ile Ile Leu Leu Arg Met Gly Gln Arg Asn Leu Val Val

65 70 75 80

Val Ser Ser Pro Glu Leu Ala Lys Glu Val Leu His Thr Gln Gly Val

85 90 95

Glu Phe Gly Ser Arg Thr Arg Asn Val Val Phe Asp Ile Phe Thr Gly

100 105 110

Lys Gly Gln Asp Met Val Phe Thr Val Tyr Gly Glu His Trp Arg Lys

115 120 125

Met Arg Arg Ile Met Thr Val Pro Phe Phe Thr Asn Lys Val Val Gln

130 135 140

Gln Tyr Arg Tyr Gly Trp Glu Ala Glu Ala Ala Ala Val Val Asp Asp

145 150 155 160

Val Lys Lys Asn Pro Ala Ala Ala Thr Glu Gly Ile Val Ile Arg Arg

165 170 175

Arg Leu Gln Leu Met Met Tyr Asn Asn Met Phe Arg Ile Met Phe Asp

180 185 190

Arg Arg Phe Glu Ser Glu Asp Asp Pro Leu Phe Leu Lys Leu Lys Ala

195 200 205

Leu Asn Gly Glu Arg Ser Arg Leu Ala Gln Ser Phe Glu Tyr Asn Tyr

210 215 220

Gly Asp Phe Ile Pro Ile Leu Arg Pro Phe Leu Arg Asn Tyr Leu Lys

225 230 235 240

Leu Cys Lys Glu Val Lys Asp Lys Arg Ile Gln Leu Phe Lys Asp Tyr

245 250 255

Phe Val Asp Glu Arg Lys Lys Ile Gly Ser Thr Lys Lys Met Asp Asn

260 265 270

Asn Gln Leu Lys Cys Ala Ile Asp His Ile Leu Glu Ala Lys Glu Lys

275 280 285

Gly Glu Ile Asn Glu Asp Asn Val Leu Tyr Ile Val Glu Asn Ile Asn

290 295 300

Val Ala Ala Ile Glu Thr Thr Leu Trp Ser Ile Glu Trp Gly Ile Ala

305 310 315 320

Glu Leu Val Asn His Pro Glu Ile Gln Ala Lys Leu Arg His Glu Leu

325 330 335

Asp Thr Lys Leu Gly Pro Gly Val Gln Ile Thr Glu Pro Asp Val Gln

340 345 350

Asn Leu Pro Tyr Leu Gln Ala Val Val Lys Glu Thr Leu Arg Leu Arg

355 360 365

Met Ala Ile Pro Leu Leu Val Glu His Met Asn Leu His Asp Ala Lys

370 375 380

Leu Gly Gly Phe Asp Ile Pro Ala Glu Ser Lys Ile Leu Val Asn Ala

385 390 395 400

Trp Trp Leu Ala Asn Asn Pro Asp Gln Trp Lys Lys Pro Glu Glu Phe

405 410 415

Arg Pro Glu Arg Phe Leu Glu Glu Glu Ala Lys Val Glu Ala Asn Gly

420 425 430

Asn Asp Phe Arg Tyr Leu Pro Phe Gly Val Gly Arg Arg Ser Cys Pro

435 440 445

Gly Ile Ile Leu Ala Leu Pro Ile Leu Gly Ile Thr Ile Gly Arg Leu

450 455 460

Val Gln Asn Phe Glu Leu Leu Pro Pro Pro Gly Gln Ser Lys Ile Asp

465 470 475 480

Thr Asp Glu Lys Gly Gly Gln Phe Ser Leu His Ile Leu Lys His Ser

485 490 495

Thr Ile Val Ala Lys Pro Arg Ser Phe

500 505

504

›PRT

Mus musculus

Met Glu Leu Leu Thr Gly Ala Gly Leu Trp Ser Val Ala Ile Phe Thr

1 5 10 15

Val Ile Phe Ile Leu Leu Val Asp Leu Met His Arg His Gln Arg Trp

20 25 30

Thr Ser Arg Tyr Pro Pro Gly Pro Val Pro Trp Pro Val Leu Gly Asn

35 40 45

Leu Leu Gln Val Asp Leu Asp Asn Met Pro Tyr Ser Leu Tyr Lys Leu

50 55 60

Gln Asn Arg Tyr Gly Asp Val Phe Ser Leu Gln Met Gly Trp Lys Pro

65 70 75 80

Met Val Val Ile Asn Gly Leu Lys Ala Met Lys Glu Val Leu Leu Thr

85 90 95

Cys Gly Glu Asp Thr Ala Asp Arg Pro Gln Val Pro Ile Phe Glu Tyr

100 105 110

Leu Gly Val Lys Pro Gly Ser Gln Gly Val Val Leu Ala Pro Tyr Gly

115 120 125

Pro Glu Trp Arg Glu Gln Arg Arg Phe Ser Val Ser Thr Leu Arg Asn

130 135 140

Phe Gly Leu Gly Lys Lys Ser Leu Glu Asp Trp Val Thr Lys Glu Ala

145 150 155 160

Arg His Leu Cys Asp Ala Phe Thr Ala Gln Ala Gly Gln Pro Ile Asn

165 170 175

Pro Asn Thr Met Leu Asn Asn Ala Val Cys Asn Val Ile Ala Ser Leu

180 185 190

Ile Phe Ala Arg Arg Phe Glu Tyr Glu Asp Pro Tyr Leu Ile Arg Met

195 200 205

Gln Lys Val Leu Glu Asp Ser Leu Thr Glu Ile Ser Leu Ala Tyr Ser

210 215 220

Glu Val Leu Asn Met Phe Pro Ile Leu Leu Arg Ile Pro Gly Leu Pro

225 230 235 240

Gly Lys Val Phe Gln Gly Gln Lys Ser Leu Leu Ala Ile Val Glu Asn

245 250 255

Leu Leu Thr Glu Asn Arg Asn Thr Trp Asp Pro Asp Gln Pro Pro Arg

260 265 270

Asn Leu Thr Asp Ala Phe Leu Ala Glu Ile Glu Lys Val Lys Gly Asn

275 280 285

Ala Glu Ser Ser Phe Asn Asp Glu Asn Leu Arg Met Val Val Leu Asp

290 295 300

Leu Phe Thr Ala Gly Met Val Thr Thr Ser Thr Thr Leu Ser Trp Ala

305 310 315 320

Leu Leu Leu Met Ile Leu His Pro Asp Val Gln Arg Arg Val Gln Gln

325 330 335

Glu Ile Asp Ala Val Ile Gly Gln Val Arg His Pro Glu Met Ala Asp

340 345 350

Gln Ala Arg Met Pro Tyr Thr Asn Ala Val Ile His Glu Val Gln Arg

355 360 365

Phe Gly Asp Ile Ala Pro Leu Asn Leu Pro Arg Ile Thr Ser Arg Asp

370 375 380

Ile Glu Val Gln Asp Phe Leu Ile Pro Lys Gly Ser Ile Leu Ile Pro

385 390 395 400

Asn Met Ser Ser Val Leu Lys Asp Glu Thr Val Trp Glu Lys Pro Leu

405 410 415

Arg Phe His Pro Glu His Phe Leu Asp Ala Gln Gly His Phe Val Lys

420 425 430

Pro Glu Ala Phe Met Pro Phe Ser Ala Gly Arg Arg Ser Cys Leu Gly

435 440 445

Glu Pro Leu Ala Arg Met Glu Leu Phe Leu Phe Phe Ile Cys Leu Leu

450 455 460

Gln His Phe Ser Phe Ser Val Pro Asn Gly Gln Pro Arg Pro Arg Asn

465 470 475 480

Leu Gly Val Phe Pro Phe Pro Val Ala Pro Tyr Pro Tyr Gln Leu Cys

485 490 495

Ala Val Met Arg Glu Gln Gly His

500

524

›PRT

Rattus norvegicus

Met Pro Ser Val Tyr Gly Phe Pro Ala Phe Thr Ser Ala Thr Glu Leu

1 5 10 15

Leu Leu Ala Val Thr Thr Phe Cys Leu Gly Phe Trp Val Val Arg Val

20 25 30

Thr Arg Thr Trp Val Pro Lys Gly Leu Lys Ser Pro Pro Gly Pro Trp

35 40 45

Gly Leu Pro Phe Ile Gly His Val Leu Thr Leu Gly Lys Asn Pro His

50 55 60

Leu Ser Leu Thr Lys Leu Ser Gln Gln Tyr Gly Asp Val Leu Gln Ile

65 70 75 80

Arg Ile Gly Ser Thr Pro Val Val Val Leu Ser Gly Leu Asn Thr Ile

85 90 95

Lys Gln Ala Leu Val Lys Gln Gly Asp Asp Phe Lys Gly Arg Pro Asp

100 105 110

Leu Tyr Ser Phe Thr Leu Ile Ala Asn Gly Gln Ser Met Thr Phe Asn

115 120 125

Pro Asp Ser Gly Pro Leu Trp Ala Ala Arg Arg Arg Leu Ala Gln Asn

130 135 140

Ala Leu Lys Ser Phe Ser Ile Ala Ser Asp Pro Thr Leu Ala Ser Ser

145 150 155 160

Cys Tyr Leu Glu Glu His Val Ser Lys Glu Ala Glu Tyr Leu Ile Ser

165 170 175

Lys Phe Gln Lys Leu Met Ala Glu Val Gly His Phe Asp Pro Phe Lys

180 185 190

Tyr Leu Val Val Ser Val Ala Asn Val Ile Cys Ala Ile Cys Phe Gly

195 200 205

Arg Arg Tyr Asp His Asp Asp Gln Glu Leu Leu Ser Ile Val Asn Leu

210 215 220

Ser Asn Glu Phe Gly Glu Val Thr Gly Ser Gly Tyr Pro Ala Asp Phe

225 230 235 240

Ile Pro Ile Leu Arg Tyr Leu Pro Asn Ser Ser Leu Asp Ala Phe Lys

245 250 255

Asp Leu Asn Lys Lys Phe Tyr Ser Phe Met Lys Lys Leu Ile Lys Glu

260 265 270

His Tyr Arg Thr Phe Glu Lys Gly His Ile Arg Asp Ile Thr Asp Ser

275 280 285

Leu Ile Glu His Cys Gln Asp Arg Arg Leu Asp Glu Asn Ala Asn Val

290 295 300

Gln Leu Ser Asp Asp Lys Val Ile Thr Ile Val Phe Asp Leu Phe Gly

305 310 315 320

Ala Gly Phe Asp Thr Ile Thr Thr Ala Ile Ser Trp Ser Leu Met Tyr

325 330 335

Leu Val Thr Asn Pro Arg Ile Gln Arg Lys Ile Gln Glu Glu Leu Asp

340 345 350

Thr Val Ile Gly Arg Asp Arg Gln Pro Arg Leu Ser Asp Arg Pro Gln

355 360 365

Leu Pro Tyr Leu Glu Ala Phe Ile Leu Glu Thr Phe Arg His Ser Ser

370 375 380

Phe Val Pro Phe Thr Ile Pro His Ser Thr Ile Arg Asp Thr Ser Leu

385 390 395 400

Asn Gly Phe Tyr Ile Pro Lys Gly His Cys Val Phe Val Asn Gln Trp

405 410 415

Gln Val Asn His Asp Gln Glu Leu Trp Gly Asp Pro Asn Glu Phe Arg

420 425 430

Pro Glu Arg Phe Leu Thr Ser Ser Gly Thr Leu Asp Lys His Leu Ser

435 440 445

Glu Lys Val Ile Leu Phe Gly Leu Gly Lys Arg Lys Cys Ile Gly Glu

450 455 460

Ile Ile Gly Arg Leu Glu Val Phe Leu Phe Leu Ala Ile Leu Leu Gln

465 470 475 480

Gln Met Glu Phe Asn Val Ser Pro Gly Glu Lys Val Asp Met Thr Pro

485 490 495

Ala Tyr Gly Leu Thr Leu Lys His Ala Arg Cys Glu His Phe Gln Val

500 505 510

Gln Met Arg Ser Ser Gly Pro Gln His Leu Gln Ala

515 520

508

›PRT

Homo sapiens

Met Trp Glu Leu Val Ala Leu Leu Leu Leu Thr Leu Ala Tyr Leu Phe

1 5 10 15

Trp Pro Lys Arg Arg Cys Pro Gly Ala Lys Tyr Pro Lys Ser Leu Leu

20 25 30

Ser Leu Pro Leu Val Gly Ser Leu Pro Phe Leu Pro Arg His Gly His

35 40 45

Met His Asn Asn Phe Phe Lys Leu Gln Lys Lys Tyr Gly Pro Ile Tyr

50 55 60

Ser Val Arg Met Gly Thr Lys Thr Thr Val Ile Val Gly His His Gln

65 70 75 80

Leu Ala Lys Glu Val Leu Ile Lys Lys Gly Lys Asp Phe Ser Gly Arg

85 90 95

Pro Gln Met Ala Thr Leu Asp Ile Ala Ser Asn Asn Arg Lys Gly Ile

100 105 110

Ala Pro Ala Asp Ser Gly Ala His Trp Gln Leu His Arg Arg Leu Ala

115 120 125

Met Ala Thr Phe Ala Leu Phe Lys Asp Gly Asp Gln Lys Leu Glu Lys

130 135 140

Ile Ile Cys Gln Glu Ile Ser Thr Leu Cys Asp Met Leu Ala Thr His

145 150 155 160

Asn Gly Gln Ser Ile Asp Ile Ser Phe Pro Val Phe Val Ala Val Thr

165 170 175

Asn Val Ile Ser Leu Ile Cys Phe Asn Thr Ser Tyr Lys Asn Gly Asp

180 185 190

Pro Glu Leu Asn Val Ile Gln Asn Tyr Asn Glu Gly Ile Ile Asp Asn

195 200 205

Leu Ser Lys Asp Ser Leu Val Asp Leu Val Pro Trp Leu Lys Ile Phe

210 215 220

Pro Asn Lys Thr Leu Glu Lys Leu Lys Ser His Val Lys Ile Arg Asn

225 230 235 240

Asp Leu Leu Asn Lys Ile Leu Glu Asn Tyr Lys Glu Lys Phe Arg Ser

245 250 255

Asp Ser Ile Thr Asn Met Leu Asp Thr Leu Met Gln Ala Lys Met Asn

260 265 270

Ser Asp Asn Gly Asn Ala Gly Pro Asp Gln Asp Ser Glu Leu Leu Ser

275 280 285

Asp Asn His Ile Leu Thr Thr Ile Gly Asp Ile Phe Gly Ala Gly Val

290 295 300

Glu Thr Thr Thr Ser Val Val Lys Trp Thr Leu Ala Phe Leu Leu His

305 310 315 320

Asn Pro Gln Val Lys Lys Lys Leu Tyr Glu Glu Ile Asp Gln Asn Val

325 330 335

Gly Phe Ser Arg Thr Pro Thr Ile Ser Asp Arg Asn Arg Leu Leu Leu

340 345 350

Leu Glu Ala Thr Ile Arg Glu Val Leu Arg Leu Arg Pro Val Ala Pro

355 360 365

Met Leu Ile Pro His Lys Ala Asn Val Asp Ser Ser Ile Gly Glu Phe

370 375 380

Ala Val Asp Lys Gly Thr Glu Val Ile Ile Asn Leu Trp Ala Leu His

385 390 395 400

His Asn Glu Lys Glu Trp His Gln Pro Asp Gln Phe Met Pro Glu Arg

405 410 415

Phe Leu Asn Pro Ala Gly Thr Gln Leu Ile Ser Pro Ser Val Ser Tyr

420 425 430

Leu Pro Phe Gly Ala Gly Pro Arg Ser Cys Ile Gly Glu Ile Leu Ala

435 440 445

Arg Gln Glu Leu Phe Leu Ile Met Ala Trp Leu Leu Gln Arg Phe Asp

450 455 460

Leu Glu Val Pro Asp Asp Gly Gln Leu Pro Ser Leu Glu Gly Ile Pro

465 470 475 480

Lys Val Val Phe Leu Ile Asp Ser Phe Lys Val Lys Ile Lys Val Arg

485 490 495

Gln Ala Trp Arg Glu Ala Gln Ala Glu Gly Ser Thr

500 505

494

›PRT

Rattus norvegicus

Met Leu Ala Ser Gly Leu Leu Leu Val Ala Ser Val Ala Phe Leu Ser

1 5 10 15

Val Leu Val Leu Met Ser Val Trp Lys Gln Arg Lys Leu Ser Gly Lys

20 25 30

Leu Pro Pro Gly Pro Thr Pro Leu Pro Phe Ile Gly Asn Tyr Leu Gln

35 40 45

Leu Asn Thr Glu Lys Met Tyr Ser Ser Leu Met Lys Ile Ser Gln Arg

50 55 60

Tyr Gly Pro Val Phe Thr Ile His Leu Gly Pro Arg Arg Val Val Val

65 70 75 80

Leu Cys Gly Gln Glu Ala Val Lys Glu Ala Leu Val Asp Gln Ala Glu

85 90 95

Glu Phe Ser Gly Arg Gly Glu Gln Ala Thr Phe Asp Trp Leu Phe Lys

100 105 110

Gly Tyr Gly Val Ala Phe Ser Ser Gly Glu Arg Ala Lys Gln Leu Arg

115 120 125

Arg Phe Ser Ile Ala Thr Leu Arg Asp Phe Gly Val Gly Lys Arg Gly

130 135 140

Ile Glu Glu Arg Ile Gln Glu Glu Ala Gly Phe Leu Ile Glu Ser Phe

145 150 155 160

Arg Lys Thr Asn Gly Ala Leu Ile Asp Pro Thr Phe Tyr Leu Ser Arg

165 170 175

Thr Val Ser Asn Val Ile Ser Ser Ile Val Phe Gly Asp Arg Phe Asp

180 185 190

Tyr Glu Asp Lys Glu Phe Leu Ser Leu Leu Arg Met Met Leu Gly Ser

195 200 205

Phe Gln Phe Thr Ala Thr Ser Thr Gly Gln Leu Tyr Glu Met Phe Ser

210 215 220

Ser Val Met Lys His Leu Pro Gly Pro Gln Gln Gln Ala Phe Lys Glu

225 230 235 240

Leu Gln Gly Leu Glu Asp Phe Ile Thr Lys Lys Val Glu Gln Asn Gln

245 250 255

Arg Thr Leu Asp Pro Asn Ser Pro Arg Asp Phe Ile Asp Ser Phe Leu

260 265 270

Ile Arg Met Leu Glu Glu Lys Lys Asn Pro Asn Thr Glu Phe Tyr Met

275 280 285

Lys Asn Leu Val Leu Thr Thr Leu Asn Leu Phe Phe Ala Gly Thr Glu

290 295 300

Thr Val Ser Thr Thr Leu Arg Tyr Gly Phe Leu Leu Leu Met Arg His

305 310 315 320

Pro Asp Ile Glu Ala Lys Val His Glu Glu Ile Asp Arg Val Ile Gly

325 330 335

Arg Asn Arg Gln Ala Lys Tyr Glu Asp Arg Met Lys Met Pro Tyr Thr

340 345 350

Glu Ala Val Ile His Glu Ile Gln Arg Phe Ala Asp Met Ile Pro Met

355 360 365

Gly Leu Ala Arg Arg Val Thr Lys Asp Thr Lys Phe Arg Glu Phe Leu

370 375 380

Leu Pro Lys Gly Thr Glu Val Phe Pro Met Leu Gly Ser Val Leu Lys

385 390 395 400

Asp Pro Lys Phe Phe Ser Asn Pro Asn Asp Phe Asn Pro Lys His Phe

405 410 415

Leu Asp Asp Lys Gly Gln Phe Lys Lys Ser Asp Ala Phe Val Pro Phe

420 425 430

Ser Ile Gly Lys Arg Tyr Cys Phe Gly Glu Gly Leu Ala Arg Met Glu

435 440 445

Leu Phe Leu Phe Leu Thr Asn Ile Met Gln Asn Phe Cys Phe Lys Ser

450 455 460

Pro Gln Ala Pro Gln Asp Ile Asp Val Ser Pro Arg Leu Val Gly Phe

465 470 475 480

Ala Thr Ile Pro Pro Asn Tyr Thr Met Ser Phe Leu Ser Arg

485 490

›DNA

Artificial Sequence

Description of Artificial Sequence Antisense

primer derived from Helianthus tuberosus CYP76B1 nucleic acid

sequence

tatatagaat tcatgctaat gatgatgatg gttcaatggt attggaacaa cac 53

›Tables in the description — 6

TABLE 1 — ECOD activity (pkat · mg −1 protein) NADPH + anti-ECOD

		antibodies	cumene
Microsomes	NADPH	(inhibition)	hydroperoxide
Aminopyrine-induced	5.2 ± 0.1	2.6 ± 0.1	2.5 ± 0.09
tissues		(50%)
Control yeast	n.d.	—	n.d.
Transformed yeast	8.4 ± 0.05	7.5 ± 0.2	n.d.
		(10.7%)

TABLE 2 — CYP76B1-dependent metabolism of xenobiotics. Activity (pkat mg-1 protein)

	NAD-					CT-	IP-
Strain	PH	MCOD	ECOD	MROD	EROD	UDM	UDM
Control	+	n.d.	n.d.	n.d.	n.d.	n.d.	n.d.
W(R)	+	10.9 ±	8.4 ±	12.6 ±	5.1 ±	1223 ±	128 ±
		0.3	1.5	1.6	0.2	63	2
WAT11	+	16.4 ±	15.9 ±	18.6 ±	11.6 ±	4258 ±	475 ±
		0.4	0.25	0.6	0.8	24	3
WAT11	−	n.d.	n.d.	n.d.	n.d.	n.d.	n.d.

TABLE 3 — Catalytic parameters of the reactions catalyzed by CYP76B1 in the presence of different P450 reductases.

	Coexpressed	K m	K cat	K cat /K m
Activity	reductase	(μM)	(min −1 )	(min −1 μM −1 )
MCOD	yeast	899	13	0.01
	ATR1	808	31	0.04
ECOD	yeast	74	10	0.13
	ATR1	60	30	0.5
MROD	yeast	0.23	15	64
	ATR1	0.17	41	237
EROD	yeast	0.49	6	12
	ATR1	0.17	28	165
IPUDM	yeast	361	40	0.11
	ATR1	289	147	0.51
CTUDM	yeast	202	376	1.8
	ATR1	179	803	4.5
monodemethyl-	ATR1	81	46	0.57
CTU DM

TABLE 4 — Binding parameters of the spectra induced upon fixation of phenylureas in the active site of CYP76B1.

				K S	ΔA max ×
Name	R 1	R 2	R 3	(μM)	10 −3
Monolinuron	—OCH 3	—Cl	—H	4.8	6.6
Chlorbromuron	—OCH 3	—Br	—Cl	5.3	6.7
Metobromuron	—OCH 3	—Br	—H	6.2	7.6
	—CH 3	—Cl	—CH 3	14.5	5.4
Diuron	—CH 3	—Cl	—Cl	20	4.8
Chlortoluron	—CH 3	—CH 3	—Cl	24	5.1
Isoproturon	—CH 3	—CH(CH 3 ) 2	—H	55	8.2
	—CH 3	—CH 3	—CH 3	60	6.6
Metoxuron	—CH 3	—OCH 3	—H	117	6.1

1	1737	DNA	Helianthus tuberosus
CDS	(25)..(1494)

2	1634	DNA	Helianthus tuberosus
CDS	(1)..(1425)	E3C

1 of 53 part labels are ours — the grant heads the rest

Claims as granted

10 claims

Classifications

15 codes

IPC · International Patent Classification

Section C — Chemistry; metallurgy

C12N15/29
C12N15/82
C12N9/02

USPC · US Patent Classification

800/298536/23.6435/410536/320.1435/255.2536/23.7800/300536/23.2435/418435/419435/320.1536/23.1

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Amy J. Nelson

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