USPatent applicationPatented

Modified proteinase inhibitors

Granted 20 Jan 2004 · 5 office actions

Life of the application

15 dated events
⤢ drag to zoom19961998200020022004200620082010201220142016ProsecutionOwnershipTerm & fees
ProsecutionOwnershipTerm & feeshover for detail · click to open

Abstract

The invention relates to proteinase inhibitors and in particular cystatins which have been modified so as to enhance the effectiveness of synthetically manufactured counterparts. The modifications include either site-directed alterations in the structure of the protein and/or the production of hybrid molecules.

Description

13 parts
›The invention relates to proteinase inhibitors and in…

The invention relates to proteinase inhibitors and in particular novel proteinase inhibitors, methods for producing such inhibitors and products and processors including such inhibitors.

Proteinases are enzymes that break down proteins, their substrate specificity varies considerably and therefore does not form a basis for the purpose of classification. Rather, typically, these enzymes are classified according to the nature of the catalytic reaction that each undertakes. Thus proteinases are divided into four groups termed serine proteinases, cysteine proteinases, aspartic proteinases and metalloproteinases. Serine proteinases and cysteine proteinases are both widespread and diverse and are found in both prokaryotic and eukaryotic organisms, including plants and animals. In contrast, aspartic proteinases seem to be found only in eukaryotic organisms. Since these enzymes are used to break down protein the origin and/or the location of the enzymes determines whether they are beneficial or detrimental to a given organism. For example, where the enzymes are used by pathogens or parasites or pests they are typically used to break down host cell tissue and are therefore detrimental.

Pathogens, parasites or pests such as bacteria, fungi, plants, insects, nematode worms etc produce proteinases which break down host cell tissue to the detriment of the host.

For example, annual global crop losses caused by fungi exceed a thousand million pounds. The pathogen, Botrytis cinerea is of major economic importance because it causes disease in thirty crop plant species, with serious losses incurred in the glass house, in viticulture and as a result of post-harvest disease of fruit and vegetables. This major pathogen can be overcome with fungicides but unfortunately, there are disadvantages associated with the use of fungicides in order to control it. These include a financial burden associated with use of the fungicide, the potential environmental hazard arising from the use of toxic fungicides, with attendant consumer concern, and major problems of pathogen resistance to fungicides. In addition, many fungicides are effective against only a limited range of pathogenic fungi.

The above disadvantages are also common to the use of synthetic agents manufactured against other pathogens, parasites or pests such as insects, or specific insects, bacteria or specific bacteria and other eukaryotic organisms including, but not limited to: protozoa such as amoebas, intestinal flagellates and ciliates, haemoflagellates, such as leishmania or trypanosomes, sporozoa, such as those responsible for malaria, arthropod-borne organisms; helminths such as trematodes or flukes, cestoidea, acanthocephala, nematodes, trichuris, trichinella, hook worms, filariae, spiruroids; arthropods such as acarina or mites, ticks heteroptera, lice, flees, diptera such as disease-carrying flies including mosquitos, maggots and myiasis.

Inhibition of proteinases is known to occur naturally following pathogen infection. For example, it has been shown that following infection by Phytophthora infestans varieties of tomato able to resist the fungus show increased levels of proteinase inhibitors (1). This relationship between resistance and the capacity to produce proteinase inhibitors has been used to good effect in the control of pathogen, pests and parasitic diseases. For example, in the most relevant prior art known to the applicant, plant pests are controlled by recombinantly introducing a proteinase inhibitor, animal-derived egg white cystatin, into a selected monocotyledon such as a cereal, forage or turf grass, or a dicotyledon such as a vegetable, tube, or sugar crop, (EP 0 348 348). Similarly, plant nematode pests have been controlled using a proteinase inhibitor, plant-derived cowpea trypsin inhibitor, which has been recombinantly introduced into tobacco, tomato, cotton, oilseed rape, vegetable crop or ornamental plants (EP 0 502 730). In addition, it has been suggested that proteinase inhibitors can be used as anti-parasitic proteins which ideally can be administered to a host species either in a medicament or a food (UK Patent Application No. 94 03819.7).

It is therefore known to use proteinase inhibitors to neutralise the effects of proteinases and so combat the effects of pathogens, parasites or pests. In particular, it is known to transgenically produce plants which are provided with a specific proteinase inhibitor, such as a cysteine proteinase inhibitor.

However, it is the object of the present invention to provide a modified proteinase inhibitor which has greater efficacy than that of its unmodified counterpart or the natural proteinase inhibitor; or alternatively to synthetically manufacture and improve a proteinase inhibitor so as to provide, in one embodiment a hybrid proteinase inhibitor.

In one aspect of our invention we have focused on the group of proteinase inhibitors known as cystatins. The protein sequences of approximately 25 cystatins are known. It is possible to undertake alignment studies of these sequences in order to provide a basis for identifying structural similarities. It has been suggested that there are sufficient differences between plant and animal cystatins to justify separate classification of the two, indeed, a comparison of a plant cystatin, Oryzacystatin I Oc-I [DNA sequence structure shown in FIG. 3, SEQ ID NO:30], and an animal cystatin, egg white cystatin, reveals a significant number of differences showing that overall amino acid conservation is not high. Moreover, there are significant differences in the binding properties of animal and plant cystatins. Thus the dissociation constant Ki varies, for example, egg white cystatin has a Ki of 5×10 −12 M, whereas the plant cystatin, Oc-I, (derived from rice), has a Ki of 3×10 −8 M.

Alignment data of a number of cystatins (SEQ ID NO:1-28) is shown in FIG. 1 . The amino acids are numbered 1-181. It can be seen that there is a conserved inhibitory site at alignment amino acids 100-104, represented by the motif QVVAG (SEQ ID NO:56) or QLVAG (SEQ ID NO:57). In addition, it can be seen that there is a conserved PW motif at alignment amino acids 160-161.

›This conservation occurs in approximately two thirds of…

This conservation occurs in approximately two thirds of the known sequence structures and is thought from structural studies to be involved in the functioning of the protein and thus for inhibition of proteinases. However, some cystatins with low Ki values do not possess this PW motif therefore its importance in cystatin function is unclear.

Other works have recombinantly manufactured novel cystatins. For example, the human cysteine proteinase inhibitor cystatin C, which participates in the intracellular catabolism of proteins and peptides, in the proteolytic conversion of prohormones, in the extracellular degregation of collagen and in the penetration of normal tissues with malignant cells, has been altered. Workers have modified cystatin C so that one or more amino acids at positions 5-17, 55-59 and/or 68 have been replaced by other amino acids thus retaining the total 120 amino acids in the sequence structure. Modifications were undertaken in order to provide an animal-derived cystatin C considered to have constant activity. (WO 88/09384).

We have found, surprisingly, that site-directed modification of a plant cystatin such as, for example, Oryzacystatin I (Oc-I) can improve its binding properties and thus improve the efficacy of the enzyme in inhibiting proteinases. The site-directed modification involves elimination of the amino acid aspartic acid at position 86 of the amino acid sequence structure of the plant cystatin, this elimination improves the Ki 13 fold, that is to 2.3×10 −9 M. This modification is represented by elimination of aspartic acid (symbol D) at position 163 of the alignment amino acids shown in FIG. 1 .

Clearly, this improvement in plant cystatin Ki does not exceed animal cystatin Ki, and particularly egg white cystatin. However, there is growing concern about the liberal approach to cross species transgenics. That is to say the introduction into one species of genes wholly from another species, such as for example, the introduction into plants of human genes encoding human proteins and visa versa. Until our understanding of the consequences of genetic manipulation is complete is would seem prudent to err on the side of caution and thus adopt a more rational approach to genetic manipulation. Thus, plant breeders throughout the world would prefer to combat plant diseases using plant derived proteins, or alternatively, proteins which are significantly similar to plant proteins such that their structural, biochemical and physiological functions are either the same as, or substantially similar to, or consistent with, that of plant proteins. This letter category includes, but is not limited to hybrid molecules.

Further, many animal cystatins with lower Ki's have several disulphide bonds which are not found in plant cystatins so far characterised. Therefore in order to ensure correct protein folding it may be prudent to use at least partially a plant cystatin in plant systems. Thus, our site-directed modification of a plant proteinase inhibitor, and in particular a plant cystatin, and our hybrid proteinase inhibitor when including at least a part of a plant proteinase inhibitor have provided novel improved proteins for preferred, but not exclusive, use in plant systems.

It is of note that there is very little conservation in the alignment amino acid sequences shown in FIG. 1 above alignment amino acid 104 and therefore this makes our observation all the more startling. Previous site-directed modification studies of cystatins were concentrated on the highly conserved QVVAG motif referred to above, but modification of this region was always detrimental (12).

It follows from the foregoing that it is an object of the invention to provide a novel proteinase inhibitor having improved efficacy at least in terms of its binding to a proteinase.

It is also a further object of the invention to provide a novel proteinase inhibitor, ideally having improved efficacy, but also comprising a hybrid molecule which preferably, but not exclusively, comprises a part of a proteinase inhibitor from a first species and a part of proteinase inhibitor from a second species.

It is a further object of the invention to provide products including the whole or a part of the novel protein, or the whole or a part of the DNA encoding same, and also uses for this novel protein and/or DNA.

According to a first aspect of the invention there is therefore provided a proteinase inhibitor modified or manufactured so that it is more effective at inhibiting a proteinase with which it interacts than its corresponding naturally occurring counterpart.

Ideally, said proteinase inhibitor binds more strongly to the proteinase.

Accordingly there is provided a synthetic proteinase inhibitor which has a Ki with at least a 10 times lower value than its natural counterpart. For instance a change in Ki from 3×10 −8 M to at least 3×10 9 M represents such an improvement in Ki.

According to a second aspect of the invention there is provided a proteinase inhibitor including at least one site-directed amino acid deletion and/or substitution which lowers the Ki of the protein at least 10 fold.

Preferably the protein is a cystatin and ideally the site-directed deletion or substitution concerns deletion of either aspartic acid at position 86 of the amino acid sequence structure of Oc-I, or alternatively, deletion of aspartic acid at position 163 of the alignment amino acid sequence structure shown in FIG. 1 of an aligned proteinase inhibitor such as a cystatin, or alternatively, deletion of its functional counterpart in related proteinase inhibitors or cystatins.

Alternatively, the site-directed modification concerns substitution of said aspartic acid at said position for an alternative amino acid which has counter properties having regard to the functional property of the eliminated aspartic acid.

According to a third aspect of the invention there is provided the whole or part of the DNA sequence (SEQ ID NO:29) structure shown in FIG. 2 which DNA sequence structure encodes an example of a protein according to a first aspect of the invention.

›All the proteins of the invention, or the…

All the proteins of the invention, or the corresponding DNA sequence structures have utility in combating diseases whose symptoms are at least partially caused by or characterised by proteinase production. Thus the novel proteins and corresponding DNA sequence structures can be used, directly or indirectly, to prevent, alleviate or mitigate such diseased conditions. For example, a host organism suffering from a pathogenic, pest or parasitic condition involving protein breakdown via proteinases can be treated by receiving at least one protein of the invention. Treatment can be undertaken by applying the said protein of the invention directly to the diseased organism, for example, in the form of a chemical agent such as a pesticide, fungicide etc. or a medicament, or alternatively, by introducing the genetic sequence structure for the said protein of the invention into the genome of the host organism and ensuring that the said inventive protein is expressed by the host organism which organism is then equipped to fight the disease.

In the foregoing paragraph any one or more of the proteins of the invention may be used as aforedescribed. For example, a selected combination of the proteins of the invention, that is to say proteins including site-directed modifications and/or hybrid proteins may be used to counter the effects of any one or more proteinases.

Ideally the transformed organism is a plant.

According to a further aspect of the invention there is provided a method of conferring resistance to proteolytic damage comprising modifying or transforming a host organism so that it expresses the protein of the invention.

According to a yet further aspect of the invention there is provided a construct including a whole or part of the DNA sequence structure of the invention. Said construct may include a plasmid or a vector.

According to a yet further aspect of the invention there is provided use of the protein or DNA sequence structure of the invention as a medicament to combat proteolytic conditions ideally of a pathogenic, parasitic or pest nature.

According to a further aspect of the invention there is provided a composition effective against pathogenic, parasitic or pest diseases including the protein of the invention.

According to a yet further aspect of the invention there is provided a transgenic plant transformed with DNA encoding the protein of the invention, and ideally the DNA shown in FIG. 2, which DNA is coupled to a suitable promoter sequence so that the protein of the invention can be expressed. Ideally, expression is either generally within the plant or in the locale of the pest, pathogen or parasite interaction with the plant. As examples reference 13 provides general methods for identifying promoters from the locale of a pest, pathogen or parasite of a plant. Alternatively, or in addition expression may be selected so as to occur at a selected given point in time.

Preferably said transformed plant is a cereal crop, vegetable crop, oil crop, sugar crop, forage or turf grass, fibre plant, herbalspice plant, fruit crop or indeed any decorative plant.

According to a yet further aspect of the invention there is provided a transformed organism, plant or otherwise, which includes DNA encoding the protein of the invention, and ideally the DNA shown in FIG. 2, so that said protein can be harvested for the purpose of providing sources thereof.

Preferably, said construct is provided with suitable promoters for ensuring expression of the protein of the invention.

According to a yet further aspect of the invention there is provided a method for controlling a pathogen, parasite or pest comprising exposing said pathogen, parasite or pest to the protein of the invention.

According to a further aspect of the invention there is provided use of the protein of the invention to control a pathogen, parasite or pest.

According to a vet further aspect of the invention there is provided any one or more of the primers shown in Table 2, or primers of similar nature having additions, deletions or modifications thereto which still enable the primers to function as described herein.

The modified proteinase inhibitors of the invention may also include novel combinations of proteinase inhibitors either derived from the same or different kingdom, phylum, class, order, family, genus or species. For example, fraction(s) of animal-derived proteinase inhibitor may be combined with fraction(s) of plant-derived proteinase inhibitor, all or one or more of which may or may not include the aforedescribed modification to improve efficacy. Or alternatively, different sorts or types of plant proteinase inhibitors may be combined to provide a novel plant proteinase inhibitor, or alternatively, different sorts or types of animal proteinase inhibitors may be combined to provide a novel proteinase inhibitor, all or one of more of which may or may not include the aforedescribed modification to improve efficacy.

According to a yet further still aspect of the invention there is provided a protein and/or sequence of DNA comprising a first part from a first proteinase inhibitor and at least one other part trom at least one other proteinase inhibitor.

In a preferred embodiment of the invention the DNA sequence of the further still aspect of the invention is provided in a construct so that a corresponding protein can be produced in target tissue such as host cell tissue.

According to a yet further aspect of the invention there is provided target tissue or host cell tissue transformed with the DNA sequence structure of the further still aspect of the invention.

According to a yet further aspect of the invention there is provided a protein comprising a first part from a first cystatin and at least one other part from at least one other cystatin.

In a preferred embodiment said first part of said DNA sequence or said protein comprises plant-derived cystatin DNA or protein respectively, and said at least one other part comprises animal-derived cystatin DNA or protein respectively.

›Ideally said animal-derived DNA or protein corresponds to…

Ideally said animal-derived DNA or protein corresponds to DNA or protein from the active site of animal-derived cystatin; and preferably said plant-derived cystatin DNA or protein corresponds to DNA or protein from a structural site or structural sites or said plant-derived cystatins.

Alternatively, said DNA sequence or protein comprises different sorts or types of plant-derived cystatins.

Alternatively again, said DNA sequence or protein comprises different sorts or types of animal-derived cystatin.

According to a yet further aspect of the invention there is provided protein and/or DNA sequence structure relating to a novel proteinase inhibitor comprising both the aforementioned hybrid proteinase inhibitor and also the aforementioned site-directed modification.

All of the proteinase inhibitors of the invention have application for countering the effects of proteinases and for use in methods relating to such effects.

Thus generally speaking the invention relates to the re-design of proteins which exhibit improved functional activities. Site-directed modifications or regions of amino acid sequence are replaced with either a corresponding region of a protein (from any organism) which exhibits the desired characteristics, or with designed synthetic sequences. The amino acid framework of the original protein is ideally maintained in the final hybrid molecule.

The invention will now be described by way of example only with reference to the following figures wherein:

FIGS. 1A-C show the alignment sequence structure of a number of cystatins.

FIG. 2 shows the DNA sequence (SEQ ID NO:29) structure of the novel protein of the invention.

FIG. 3 shows the DNA sequence structure of the rice cysteine proteinase inhibitor Oryzacystatin Oc-I, (SEQ ID NO:30).

FIGS. 4A-C show the effect of cystatin expression on growth of G.pallida females parasitising A. rhizogenes -transformed tomato roots. Body size of the nematode is given as the area of its outline in sq μm; (A) controls, (B) and (C), Oc-I and Oc-IdeltaD86 expression respectively.

FIG. 5 shows the suppression of growth of fungi from spores over 6 days on agar after addition of a total of 45 μgPI(s) to the central well (panels A-F).

FIG. 6 shows the relative percentage inhibition of various hybrid proteinase inhibitors when exposed to their corresponding proteinases.

Table 1 shows the dissociation constant Ki of a variety of cystatins either in their native state or when subjected to specific modification.

Table 2 shows the sequence of 23 oligonucleotide primers (P1-23) used in PCR reactions and 2 linkers (L1-2) used in cloning, (SEQ ID NO:30-55).

Table 2a shows the sequences of primers (P24-39) used in PCR reactions to manufacture hybrid molecules, (SEQ ID NO:64-79).

Table 3 shows the nature of hybrid molecules manufactured. The bars indicate the length of Oc-I protein, areas shaded black represent the regions replaced by CEWC amino acid sequence.

›MATERIALS AND METHODS · 1 of 3

Strains and Vectors

DNA Preparation and Manipulation

Plasmid DNA was purified from E-coli cultures by the alkaline lysis method (2). Restriction digests and ligation reactions were carried out using the recommendations of the manufacturer. DNA fragments were recovered from agarose gels using an electroelution chamber (IBI) following the manufacturer's protocol. Oligonucleotides were synthesised on an Applied Biosystems 381 A instrument and further purification was only performed for oligonucleotides used in “Altered Sites II” site directed mutagenesis prbtocols by using a reverse phase COP chromatography cartridge (Cruachem. Glasgow, UK). DNA sequencing of double stranded plasmid DNA was performed using Sequenase version 2.0 (Amersham) according to the manufacturer's instructions.

Cloning of Cystatins and C. elegans Proteinase Inhibitor

Oc-I was amplified from genomic DNA of Orvza sativa L. japanica with primers P1 and P2 (see Table 2) designed from published sequence data (3) and with the addition of restriction enzyme sites to assist cloning. The intron was removed by the PCR technique of gene SOEing (4a & 4b) where primer pairs P1/P3 and P2/P4 were used to amplify the two exons. These products were then SOEn together by amplifying with primers P1 and P4 and the product cloned into Sma I/Eco R1 digested pBluescript. The sequence of the cloned coding region was verified by comparing with the published data for Oc-I (3). Amplification and intron removal of the C. elegans cysteine protease gene, gcp-I, were performed in a similar manner using primers P5-8 (Table 2) designed from sequence information (5). The final PCR product was cloned into pBluescript and checked by sequence analysis.

DNA sequence information for cowpea cysteine protease inhibitor, CCP1 (6) was used to design oligonucleotide primers, P9 and P10 (Table 2). These primers together with a cDNA clone carrying the CCP1 gene (kindly provided by Prof. P. Shewry) were used to PCR amplify a product that was cloned directly into the expression vector pQE30 (Qiagen, California, USA) utilising the Bam HI and Hind III sites incorporated into the PCR primers. Genes were cloned into the Type IV pQE expression vectors (Qiagen, California, USA) (Bam HI/Hind III) and proteins were expressed in the E-coli strain M15[pREP4].

Mutagenesis

a) N-terminal Deletions

To generate the large 72 bp deletion at the 5′-end of Oc-I, designated pdelta24Oc-I, pQE30/Oc-I was digested with Sma I and Hinc II, the large fragment purified from an agarose gel and relegated. To create the 63 bp deletion (termed pdelta21Oc-I), pQE30/Oc-I was restricted with Bam HI and Hinc II and gel purified. The 9 bp region irnnediately 5′ to the Hinc II site together with the sequence encoding the enterokinase recognition site was reintroduced by ligating the annealed oligonucleotide linkers L1 and L2 to the purified fragment.

b) C-terminal Deletions

Exonuclease III/mung bean nuclease deletions were carried out (2) to generate deletions to 24, 27, 30 and 33 bp at the 3′-end of the gene.

c) Point Mutations

The “Unique Site Elimination” (USE) strategy (Pharmacia, Upsalla Sweden) was used to generate constructs expressing single codon alternations using primers P11-P20 (Table 2) which resulted in variant forms of Oc-I having the following amino acid alterations. i) insertion of Leu between 81 and 82. ii) deletion of E13; D86; A74; M85; iii) substitution of (from, No, to) D86N; E89L; Q91L; P83A; W84A. “Altered Sites II” system (Promega, Madison, USA) which involved subcloning Oc-I into the vector pALT-Ex2, (Promega, Madison, USA) was used to generate mutants in which the codons for P83, W84 and D86 were changed to the Amber stop codon (TAG). The oligonucleotides (P21-P23) used to achieve this as shown in Table 2 where the amber stop codons are shown in bold and the point mutation to remove a Sac I site (GAGCTC) is in lower case (this change does not alter the amino acid sequence). The absence of this Sac I site was used as a diagnostic test for mutants. The “Interchange” method (Promega, Madison, USA) was to used to generate amino acid changes, to Cys, Glu, Phe, Gly, His, Pro, Arg, Lys, Gln, Ser and Tyr, at the Amber stop codon by introducing the mutant clones into twelve specific amber suppressing strains.

Expression of Oc-I and gcp-I in E coli

Oc-I expressed from pQE30 (“QlAexpression” system) contained six N-terminal histidine residues, encoded by the vector to allow one-step Nickel chelate affinity. Oc-I protein was purified from 11 cultures of E coli M15 [pREP4] harbouring the pQE30 derived expression plasmid: 20 ml of an overnight culture was inoculated into 1 litre of LB-media and grown at 37° C. to A 600 0.7-0.9. IPTG was added to a final concentration of 2 mM and growth was allowed to continue for a further 2 h. The cells were harvested by centrifugation at 10000 g for 10 min, resuspended in 12 ml of sonication buffer (50 mM Na 2 HPO 4 , 300 mM NaCI) and stored at −20° C. overnight. The sample was thawed, aliquoted to three 15 ml tubes and sonicated on ice in short pulses (3×30 sec). Cell debris was pelleted by centrifugation (10000 g) and approximately 0.5-0.75 ml of Ni-NTA resin slurry (Qiagen, Calif., USA) was added to each tube and mixed gently on ice for 1 h. The resin was collected (1000 g for 1 min) and washed five times with Sml of wash buffer (50 mM Na 2 HPO 4 pH 6.0, 500 mM NaCI, 40 mM imidazole at 4° C. for 0.5 h). Protein was eluted with lml of elution buffer (50 mM Na,HPO 4 , 300 mM NaCI, 100 mM EDTA) and the resin was repelleted at 1000 g for 1 min and the elution repeated a further two times.

The C. elegans proteinase glp-1 was expressed in an identical manner.

Delta2IOc-I contained an enterokinase recognition sequence (Asp-Asp-Asp-Asp-Lys, SEQ ID NO:58) between the N-terminal six histidines (6×His-tail) and the N-terminal residue of the truncated Oc-I protein. Enterokinase (Boeringer) was used to cleave the 6x His-tail from Delta21Oc-I, which was purified from the 6×His-tail by nickel affinity chromatography. “Centricon 10s” (Amicon) were used according to instructions provided with the product to separate Oc-I from contaminating enterokinase.

›MATERIALS AND METHODS · 2 of 3

Determination of Ki's

To determine the Ki of cystatins biochemical assays were performed according to the procedure of Barrett (7) and Ki values were calculated as described by Abe et al. (3)

SDS PAGE and Western Blot Analysis

All purified proteins were analysed by SDS-PAGE (8). Westem blots were performed according to the protocol for “mini protein II” (Biorad, Hertfordshire, UK) using PVDF membrane (Millipore, Massachusetts, USA).

Antibody Production

Polyclonal antibodies against Oc-I were raised in male Wistar rats (6 weeks old). Three interperitoneal injections of 100 ug Oc-I in a final volume of 300 ml were given at four week intervals. The first injection was an emulsion of protein and complete Freunds adjuvant in a 1:1 (v/v) ratio and the second and third injection were similar but used incomplete Freunds adjuvant. Ten days after the final injection, blood was collected and allowed to coagulate at 4° C. before centrifugation at 5000 g for 10 min. The resultant serum was collected and stored in 50% (v/v) glycerol at −70° C. The serum gave optimal results in ELISA at a dilution of 1 in 10000 and recognised both native and denatured Oc-I protein.

ELISAs

ELISAs were performed to determine the level of expression of cystatins in transgenic roots. Root segments of about 2mm were ground in liquid nitrogen, transferred to a 15 ml Falcon tube prior to the addition of 1 ml of 0.5×PBS was added and shaking at 4° C. for 15 min to dissolve the soluble protein fraction. Protein was acetone precipitated and the precipitant was resuspended in coating buffer (15 mM Na 2 HCO 3 , 34 mM NaHCO 3 , pH 9.6). Protein concentration was determined by a standard assay (14). Wells of a Maxisorb microtitre plate were coated with 100 mg protein for 48 h at 4° C. Plates were blocked with anti-Oc-I antibody (1 in 10,000 dilution). Activity was detected by adding substrate and the absorbance of the samples was measured at 405 nm when coloration developed.

Different amounts of Oc-I were added to aliquots of 100 mg of total protein extracted from untransformed roots and used concurrently in ELISA. assays with unknown samples to provide internal standards over the range of 0-2% Oc-I in total soluble protein.

Culture of Celegans

Caenorhaboditis elegans was cultured on NGM agar carrying a lawn of E-coli OP50 cells as described by Wood (9). Populations were maintained for 5 days before an agar plug was inserted into fresh media. When required, cystatins were added to the media at a final concentration of 2.5 mg 1 −1 just prior to polymerisation. Single nematodes were transferred from non-supplemented solid agar plates to plates containing Oc-I, DeltaD86 Oc-I or BSA. Where necessary ten replicates were carried out for each treatment.

Transgenic Tomato Root Culture

Oc-I derivative genes were cloned into the vector pBIN19 and then introduced into Agrobacterium rhizogenes strain LBA9402 by electrotransformation for use in transformation of Lycopersicon esculentum cv Ailsa Craig by a standard protocol (15). Subsequently roots were grown on 0.5×Murashige and Skoog basal salts mixture supplemented with Gamborgs B5 vitamins and 3% sucrose (w/v) and 0.2% phytagel (w/v) plus 100 mg 1 −1 kanamycin, solid medium, during initial selection. Western blots were used to confirm the presence of Oc-I or mutant forms in putatively transformed roots.

Challenge of Roots by Globodera pallida

The J2 were obtained from cysts of G.pallida and sterilised extensively before use. The cysts were soaked in running tap water for 2-3 days followed by an overnight soak in 0.1% (v/v) malachite green at room temperature. Cysts were then rinsed for 8h in running tap water prior to soaking overnight at 4° C. in an antibiotic cocktail (8 mg ml −1 streptomycin sulphate, 6 mg ml −1 penicillin G, 6.13 mg ml −1 polymycin B, Smg ml −1 tetracycline and 1 mg ml −1 amphotericin B). The cysts were then washed in filter-sterilised tap water and set to hatch in filter-sterilised potato root diffusate. The overnight hatch of J2s was counted and sterilised sequentially for 10 min with the following antibiotics; 0.1% streptomycin sulphate, 0.1% penicillin G, 0.1% amphotericin B and 0.1% cetyltrimethylammoniumbromide (Cetavlon). The nematodes were pelleted between treatments by, brief microcentrifugation. They were washed extensively in filter sterilised tap water and used immediately. Roots of transformed lines were cultured for 4 weeks before 2 cm lengths were transferred to fresh media. After a further 3-4 days, 5m1 aliquots containing 35 J2s were pipetted onto each actively growing root approximately 1 cm from its tip. A 1 cm 2 piece of sterile GFA filter paper was placed over the area to aid infection and was removed 24 h later.

At harvest infected roots were removed from petri dishes, rinsed in water and placed in 1% (w/v) sodium hypochlorite for 2 min. For early time points, roots were plunged into boiling 0.1% aqueous acid fuchsin for 1 min, rinsed in water and then cleared in acidified glycerol at 60° C. overnight to facilitate visualisation of nematodes. At the later time points, nematodes could be visualised without staining and were dissected from the roots. Nematodes were examined under a microscope (DBRM, Leica) at 50-200×magnification and the cross-sectional area was measured using an image analyser (Quantimet 5000° C.; Leica) attached to the microscope.

Demonstration of Antifungal Activity

We have shown that the PIs recovered after expression in pQE30 (see earlier) have anti-fungal activity. 45 μg of the recovered P1 were added at 1 μg/μl to a central well within agar plates which contained spores of B. cinerea (2.2×10 4 /plate). The spores do not germinate and the fungus failed to grow where CPTI or Oc-I has diffused into the agar from the central well. The potent effect persisted for many weeks and was enhanced by combining a serine and cysteine PI. Of particular relevance is that Oc-IdeltaD86 was more efficacious than the native form of Oc-I(FIG. 3 ). We have also established that PIs have effects on other micro-organisms including Aspergillus fumigatus (a fungal pathogen of mammals; FIG. 5) and Erwinia carorovora (a bacterial pathogen of plants). This demonstrates two of the central points underpinning this application viz. (i)the approach has a broad potential against very different fungi (ii) protein engineering can enhance the efficacy of PIs against fungi.

›MATERIALS AND METHODS · 3 of 3

Formation of Hybrid Genes

Chicken egg white cystain (CEWC) is a more potent inhibitor than either Oc-I or Oc-IΔD86. We have replaced fragments of Oc-I with the corresponding sequences of CEWC in order to create a gene of essentially plant origin with the more potent inhibitory properties.

Materials and Methods

Replacement of the N-terminus of oc-I With the Corresponding Region of cewc.

Two oligonucleotide primers (P24 and P25) were synthesised which were overlapping at their 3′ ends. These were annealed and filled-in with DNA polymerase I (Klenow fragment) to generate a double-stranded full-length sequence encoding the N-termninus of the mature form of CEWC, S E D R S R L L G A P V P V D (SEQ ID NO:59, residues 1-15, CEWC numbering). Primers P26 and P27 were used to amplify oc-I lacking the first 51 bp of coding sequence. The oc-I and cewc sequences were then joined by a PCR reaction known as SOEing (4a & 4b) to generate hybrid gene termed oc-nterm 1-15.

Replacement of the Central QVVAG and Surrounding Region of oc-I With the Corresponding Region of cewc.

A second hybrid molecule was constructed in which the central loop of the tripartite wedge, which comprises the active site of Oc-I, was replaced with the corresponding portion of CEWC. Four oligonucleotides (P28, P29, P30 and P31) were synthesised which when together encoded the CEWC sequence Y S S R V V R V I S A K R Q L V S G I K Y I L Q (SEQ ID NO:60, residues 40-63). Primer pairs P28/P29 and P30/P31 were annealed and treated with DNA polymerase I (Klenow fragment) to generate two double-stranded fragments which were subsequently SOEn together. Fragments of oc-I encoding both the N- and C-terminal regions were amplified using primers P32/P33 and P27/P34 respectively. The synthetic cewc sequence (P28-31) was SOEn to the N-terminal fragment of oc-I which was in turn SOE-n to the C-terrninal fragment of oc-I generating the hybrid gene glvsg40-63.

Replacement of the C-terminus of oc-i With the Corresponding Region of cewc.

The region of cewc encoding the C-terminal 20 amino acids, F V V Y S I P W L N Q I K L L E S K C Q (SEQ ID NO:61, residues 97-116) was generated, using primers P35 and P36 in an identical manner to that encoding the N-terminus described above. Primers P32 and P37 were used to amplify oc-I lacking the terminal 51 bp of coding sequence. The oc-I and cewc sequences were SOEn together to generate the hybrid termed oc-cterm97-116.

Generating Hybrids With Shorter cewc Sequences

To determine whether shorter cewc regions could confer greater inhibitory potency than native Oc-I in a hybrid cystatin further hybrid molecules containing smaller regions of CEWC were generated. Such hybrid proteins would retain more of the amino acid sequence of the original plant molecule. Two primers P38 and P39, where used in USE mutagenic reactions, this generated two hybrid genes terms oc-qlvsg52-60 and oc-pw101-107 which encoded the contiguous cewc residues R Q L V S G I K Y (SEQ ID NO:62, residues 52-60 critical cewc active site [12]) and S I P W L N Q (SEQ ID NO:63, residues 101-107, important region of C-terminus [16]) respectively.

Generating a Matrix of Hybrid Molecules

Hybrid molecules in which multiple sections of oc-I have been replaced by the corresponding cewc sequences were generated by utilising conveniently situated restriction enzyme sites in oc-I. Sequences encoding the N-terminus of either the native oc-I or the N-terminal hybrid gene were removed by Hinc II restriction digest. Sequences encoding the C-terminus of either native oc-I of the C-terminal hybrid gene were removed by Foc I-restriction digest. By ligating a fragment from one hybrid gene to that of another, further hybrid molecules were generated in which two or three of the original oc-I fragments were replaced by those of cewc. A total of 15 hybrid genes were constructed (Table 3).

›RESULTS · 1 of 2

Modelling

Protein sequence alignments were generated using the program SOMAP to align protein sequence selected from the OWL database. An initial alignment of cysteine proteinase sequences served to demonstrate the high degree of conservation throughout the cysteine proteinase family and also confirmed that using papain as our initial target was not unreasonable. A second aligned twenty five cysteine proteinase inhibitors (FIG. 1) of available sequences was generated and served to highlight previously identified conserved amino acids and provided a basis for comparing known Ki values of cysteine protease inhibitors with sequence features, information which was used in the design of mutagenesis strategies.

For structural modelling the co-ordinates of hen egg white cystatin (10) and human stefin B/papain complex (11) were kindly provided by Prof. Bode. These were used to build a three dimensional model of OcI which was then energy minimised using the program Xplor to ensure that our model had reasonable stereochemistry.

Cloning Expression and Purification of C. elegans Cysteine Protease

In order to allow Ki values to be determined against both papain and a nematode protease the C. elegans cysteine proteinase was expressed and purified from E coli gcp-1 preparations and analysed by SDS PAGE to determine purity.

Expression and Mutagenesis of Cystatins

Cystatins and Oc-I mutational variant proteins expressed and purified from E coli were analysed by SDS PAGE to determine the level of purity.

The alignment of the cysteine proteinase inhibitors (FIG. 1) shows that Oryzacystatins have no leader sequence (unlike the maize homologues) and are therefore likely to be produced intracellularly. For the three wild type inhibitors, Cowpea protease inhibitor (CCPI), maize cystatin II and Oc-I determination of Ki demonstrated that they have similar inhibitory activities. At the onset of the work CCP1 was not characterised. For these reasons Oc-I was selected for mutational analysis.

Previously published reports suggested an N-terminally truncated form of Oc-I was marginallv more efficacious than the-native protein-however, although these variant Oc-I proteins lacked 21 and 24 amino acids of Oc-I they retain N-terminal sequences encoded by vector sequences which might therefore have contributed to interactions with the proteinase. To examine this question proteins were expressed with N-terminal 24 and 21 amino acid deletions and C-termninal 8, 9, 10, 11 and 12 amino acid deletions. The Ki of these variant protein forms were determined using either papain or C. elegans protease, gcp-1 (Table 1). None of the truncated proteins were found to have a lower Ki than wild type Oc-I and both 21 and 24 amino acid deletions were inactive, suggesting that the results of other workers were due to the additional vector residues contributing to activity.

Protein sequence alignments and the model of Oc-I together with published Ki values for cystatins were used to identify mutations that might improve the inhibitory capability of Oc-I. The amino acid E13 and D86 were deleted independently. The deletion of residue E13 had no effect on the Ki Oc-I against either papain or gcp-1. Deletion of residue Delta86 lowered the Ki of Oc-I approximately 13-fold from 7 nM to 0.5 nm with papain and 8 nM to 0.6 nM with the C. elegans protease, gcp-1 (Table 1). The region of the inhibitor around D86 was targeted for further mutagenesis. Table 1 shows Ki values for all the further mutations assayed against the C. elegans cysteine protease. It is apparent from these figures that all of the substitutional mutations led to an increased Ki suggesting a decreased efficacy. The only mutation which showed a similar or marginally decreased Ki value to that of wild type Oc-I was the deletion of residue M85 (from 8 to 7.1 nM with gcp-1).

In vivo Effect of Cystatins Against C. elegans

Feeding trials were set up using C. elegans to examine the effect of protease inhibitors on nematode growth. As soon as hermophrodites became apparent on normal agar they were transferred to individual plates containing either Oc-I, Oc-IdeltaD86, CCPI or BSA and egg laying was observed. Irrespective of the culture media the hermaphrodites laid a mean number of approximately 300 eggs. Half of these eggs were removed to normal plates containing no added inhibitor. The eggs were allowed to hatch and the development of the C. elegans larvae was monitored. Under all conditions greater than 95% of the eggs hatched and development was completed for 94%, 92.5%, 97% and 96% of those hatched from eggs recovered from Oc-I, Oc-IdeltaD86, CCPI and BSA supplemented media respectively.

In a second experiment larvae hatching under normal conditions were removed to media supplemented with a protein as above. 50 larvae were transferred at 6 h, 12 h, 24 h and 30 h corresponding to the developmental times when the four larval stages L1, L2, L3 and L4 predominate. No larvae developed to an adult when transferred to media supplemented with Oc-I, Oc-IdeltaD86 or CCP1 at 6, 12 or 24 h after hatching. The larvae which failed to develop on cystatin supplemented media became moribund and failed to recover on transfer to fresh non-supplemented plates. These larvae also failed to move or respond to repeated tactile stimuli and eventually died. However 76% of larvae transferred at 30 h after hatching developed to reach the adult male or hermaphrodite stages. All juveniles hatched from eggs laid on media containing BSA and transferred to normal media developed into adult nematodes.

In Vivo Effect of Cystatin Against Globodera pallida

Preliminary assays with Oc-I and Oc-IdeltaD86 demonstrated that anti-Oc-I polyclonal antibodies both recognised both proteins equally well. ELISA established that the highest level of expression in an Oc-I expressing transformed tomato hair root line was 0.54+0.02% of the total soluble protein. Similar assays identified a Oc-IdeltaD86 line with a similar level of expression of 0.51+0.01% of the total soluble protein fraction which was selected for comparative studies. The growth of nematodes on the two transgenic cystatin lines and an untransformed control was measured for individuals recovered from several roots at approximately weekly intervals for 6 weeks. Image analysis provided values for the area of the nematode outline. Means for these values are given against time for three root lines in FIG. 4 . Statistical analysis was carried out using oneway ANOVA with an a priori contrast (12) to compare the two cystatin lines against the control for each day of measurement. This analysis establishes a significantly lower outline area (P<0.05) at 1, 2, 4, 5 and 6 weeks. Furthermore no significant increase in size occurred between 4 and 6 weeks for animals on Oc-IdeltaD86 line (P<0.05;SNK) in contrast to the other two lines. Comparative assays as described by Urwin et al (16) in which inhibition by CEWC was determined arbitrarily as 100%, have been carried out the first seven hybrid molecules listed in Table 3. Of those seven only one, OC-NTERM1-15QVLSG40-63CTERM97-116, which contains 57 CEWC residues displayed inhibition of c.a. 90%. This was greater than native Oc-I (c.a. 60%) and Oc-IΔD86 (c.a. 88%). The level of inhibition observed for the remaining six hybrid molecules was reduced (FIG. 6 ).

›RESULTS · 2 of 2

Discussion

It can be seen from the data shown in Table 1 that removal of the aspartic acid at amino acid position 86 improved the Ki value some 13-14 fold whilst deleting methionine at neighbouring position 85 had only a marginal effect on papain inhibition. Additionally, substitution of aspartic acid at position 86 by 12 other amino acids had a detrimental effect on Ki. Therefore, removal of one amino acid, thus shortening the protein backbone, seems to be a significant factor in improving Ki. Moreover, the removal of an amino acid at position 86 seems to be important. We consider that the loop containing this residue is part of the inhibitory site of the molecule with deletion of amino acid aspartic acid 86 resulting in a more similar structure to that of other cystatins perhaps improving the interaction of the conserved above referred to PW site at amino acid positions 83 and 84 with the proteinase.

In Table 1 it can be seen that the efficacy of the native and modified proteinase inhibitors was determined having regard to papain and also gcp-1 derived from the bacteria-feeding nematode C. elegans.

Moreover, other information presented herein shows that the modified protein is effective at inhibiting proteinases and so functionally active.

In addition, our data relating to hybrid molecules shows that it is possible to engineer proteins and in particular to modify plant proteins to include at least a part of an animal protein so that the functional effectiveness of a proteinase inhibitor is improved, that is to say the functional effectiveness of a plant protein approaches that of an animal protein.

Our data indicates that previous reports of inadequate control of insects at achievable levels of expression of native proteinase inhibitors may be overcome by using protein engineering as demonstrated in the present application. We have shown that protein engineering can lower and so improve Ki values and so reduce the minimum effective protein level that must be expressed in plants for effective plant protection.

›REFERENCES · 1 of 4

1) Peng, J H & Black L L (1976) Phytopatholgy. 66:958-963.

2) Maniatis T., Fritsch E F & Sambrook J (eds)(1982). Molecular cloning a laboratory manual. Cold Spring Harbor Laboratory. pp545

3) Abe K, Emori Y, Kondo H, Suzuki K & Arai S. (1987). Molecular cloning of a cysteine proteinase inhibitor of rice (Orozacystatin) Homology with animal cystains and transient expression of the ripening process of rice seeds. The Journal of Biological Chemistr . 262: 16793-16797.

4a) Ho S N, Hunt H D, Horton R M, Pullen J K and Pease L R (1989). Gene 77: 51.

4b) Horton R M, Hunt H D, Ho S N, Pullen J K and Pease L R (1989). Gene 77: 61.

5) Rav C and McKerrow J H (1992). Gut-specific and developmental expression of a Caenorhabditis elegans cysteine protease gene. Molecular and Biochemical Parasitology. 51: 239-250.

6) Fernandes K V S, Sabelli P A, Barratt D H P, Richardson M, Xavier-Filho J and Shewry P R (1993). The resistance of cowpea seeds to bruchid beetles is not related to levels of cysteine proteinase inhibitors. Plant Molecular Biology 23: 215-219.

7) Barrett A J (1972). A new assay for Cathepsin B1 and other thiol proteinases. Analytical Biochemistry 47: 280-293.

8) Hames B D and Rickwood D(eds)(1981). Gel electrophoresis of proteins a practical approach. IRL press limited pp290.

9) Wood B (ed)(1988). The nematode C. elegans . Cold Spring Harbor Laboratory press. pp606.

10) Bode W, Engh R, Musil D, Thiele U, Huber R, Karshikov A, Brzin J, Kos J and Turk V (1988). The 2.0 Å X-ray crystal structure of chicken egg white cystatin and possible mode of interaction with cysteine proteinases. The EMBO Journal 7: 2593-2599.

11) Stubbs M, Laber B, Bode W, Huber R, Jerala R, Lenarcic B (1990). The refined 2.4 Å X-ray crystal structure of combinant human stefin B in complex with the cysteine proteinase papain: a novel type of proteinase inhibitor interaction. The EMBO Journal 9: 1939-1947.

12) Arai S, Watanabe H. Kondo, Emori Y and Abe K (1991). Papain-inhibitory activity of oryzacystatin, a rice seed cysteine protease inhibitor, depends on the central Gin-Val-Val-Ala-Gly region conserved among cystatin superfamily members. J Biochem . 109:294-298.

13) Sijmons P C, Atkinson H J and Wyss U (1994). Parasitic Strategies of Root Nematodes and Associated Host Cell Responses. Annual Review of Phytopathology 32:235-259.

14) Bradford M, (1976). A rapid and sensitive method for the quantitation of microgramme quantities of protein utilising the principle of protein dye binding. Analytical Biochemistry 72:248-254.

15) Tefer D (1984). Transformation of several species of higher plant by Agrobacterium rhizogenes . Sexual transmition of the transformed genotype and phenotype. Cell 37:959-967.

16) Urwin P E, Atkinson, H J, Waller D and McPherson M J (1995). Engineered Oryzacystatin-I expressed in transgenic hairy roots confers resistance to Globodera pallida . The Plant Journal 8: 121-131.

Met Ile Pro Gly Gly Leu Ser Glu Ala Lys Pro Ala Thr Pro Glu Ile

1 5 10 15

Gln Glu Ile Val Asp Lys Val Lys Pro Gln Leu Glu Glu Lys Thr Asn

20 25 30

Glu Thr Tyr Gly Lys Leu Glu Ala Val Gln Tyr Lys Thr Gln Val Val

35 40 45

Ala Gly Thr Asn Tyr Tyr Ile Lys Val Arg Ala Gly Asp Asn Lys Tyr

50 55 60

Met His Leu Lys Val Phe Lys Ser Leu Pro Gly Gln Asn Glu Asp Leu

65 70 75 80

Val Leu Thr Gly Tyr Gln Val Asp Lys Asn Lys Asp Asp Glu Leu Thr

85 90 95

Gly Phe

Met Asp Pro Gly Thr Thr Gly Ile Val Gly Gly Val Ser Glu Ala Lys

1 5 10 15

Pro Ala Thr Pro Glu Ile Gln Glu Val Ala Asp Lys Val Lys Arg Gln

20 25 30

Leu Glu Glu Lys Thr Asn Glu Lys Tyr Glu Lys Phe Lys Val Val Glu

35 40 45

Tyr Lys Ser Gln Val Val Ala Gly Gln Ile Leu Phe Met Lys Val Asp

50 55 60

Val Gly Asn Gly Arg Phe Leu His Met Lys Val Leu Arg Gly Leu Ser

65 70 75 80

Gly Asp Asp Asp Leu Lys Leu Leu Asp Tyr Gln Thr Asn Lys Thr Lys

85 90 95

Asn Asp Glu Leu Thr Asp Phe

100

Met Met Cys Gly Ala Pro Ser Ala Thr Met Pro Ala Thr Thr Glu Thr

1 5 10 15

Gln Glu Ile Ala Asp Lys Val Lys Ser Gln Leu Glu Glu Lys Ala Asn

20 25 30

Gln Lys Phe Asp Val Phe Lys Ala Ile Ser Phe Arg Arg Gln Val Val

35 40 45

Ala Gly Thr Asn Phe Phe Ile Lys Val Asp Val Gly Glu Glu Lys Cys

50 55 60

Val His Leu Arg Val Phe Glu Pro Leu Pro His Glu Asn Lys Pro Leu

65 70 75 80

Thr Leu Ser Ser Tyr Gln Thr Asp Lys Glu Lys His Asp Glu Leu Thr

85 90 95

Tyr Phe

Met Met Cys Gly Gly Thr Ser Ala Thr Gln Pro Ala Thr Ala Glu Thr

1 5 10 15

Gln Ala Ile Ala Asp Lys Val Lys Ser Gln Leu Glu Glu Lys Glu Asn

20 25 30

Lys Lys Phe Pro Val Phe Lys Ala Leu Glu Phe Lys Ser Gln Leu Val

35 40 45

Ala Gly Lys Asn Tyr Phe Ile Lys Val Gln Val Asp Glu Asp Asp Phe

50 55 60

Val His Ile Arg Val Phe Glu Ser Leu Pro His Glu Asn Lys Pro Val

65 70 75 80

Ala Leu Thr Ser Tyr Gln Thr Asn Lys Gly Arg His Asp Glu Leu Thr

85 90 95

Tyr Phe

Met Ser Gln Glu Asn Leu Lys Ile Lys Gly Gly Leu Ser Glu Ala Arg

1 5 10 15

Pro Ala Thr Pro Glu Ile Gln Met Ile Ala Asp Lys Val Arg Pro Leu

20 25 30

Leu Glu Glu Gln Thr Asn Glu Lys Tyr Glu Lys Phe Glu Ala Val Glu

35 40 45

Tyr Lys Ser Gln Val Val Ala Gly Gln Asn Leu Phe Ile Lys Ile Asp

50 55 60

Val Gly Asn Gly Cys Phe Leu His Met Lys Val Phe Arg Gly Leu Ser

65 70 75 80

Gly Glu Asp Asp Leu Lys Leu Lys Gly Tyr Gln Thr Asn Lys Thr Lys

85 90 95

Thr Asp Glu Leu Thr Ser Met

100

Met Thr Glu Tyr Thr Ile Glu Ile Ile Gly Gly Leu Ser Glu Ala Arg

1 5 10 15

Pro Ala Thr Ser Glu Ile Gln Glu Ile Ala Asp Lys Val Arg Pro Leu

20 25 30

Leu Glu Glu Lys Thr Asn Glu Lys Tyr Glu Lys Phe Lys Ala Ile Glu

35 40 45

Tyr Lys Val Gln Val Val Gln Gly Leu Asn Tyr Phe Ile Lys Met Asn

50 55 60

Val Gly Arg Gly Cys Tyr Leu His Ile Asn Val Leu Ser Gly Ile Ser

65 70 75 80

Ser Glu Asn Asp Leu Glu Leu Thr Gly Tyr Lys Ala Lys Gln Thr Asn

85 90 95

Asn Asp Glu Leu Thr Tyr Phe

100

Met Ser Leu Gly Gly Val Ser Glu Ala Ser Arg Ala Thr Pro Glu Ile

1 5 10 15

Gln Met Ile Ala Asn Lys Val Arg Pro Gln Leu Glu Ala Lys Thr Asn

20 25 30

Lys Lys Tyr Glu Lys Phe Glu Ala Val Glu Tyr Lys Thr Gln Val Val

35 40 45

Ala Gly Glu Asn Ile Phe Ile Lys Met Asp Val Gly His Gly Cys Phe

50 55 60

Ile His Ile Lys Val Phe Asn Gly Pro Thr Gly Lys Asp Asn Tyr Glu

65 70 75 80

Leu His Gly Tyr Gln Thr Asp Lys Thr Met Asp Glu Glu Leu Thr Tyr

›REFERENCES · 2 of 4

85 90 95

Phe

Met Met Cys Gly Ala Pro Ser Ala Thr Gln Pro Ala Thr Ala Glu Thr

1 5 10 15

Gln His Ile Ala Asp Gln Val Arg Ser Gln Leu Glu Glu Lys Tyr Asn

20 25 30

Lys Lys Phe Pro Val Phe Lys Ala Val Ser Phe Lys Ser Gln Val Val

35 40 45

Ala Gly Thr Asn Tyr Phe Ile Lys Val His Val Gly Asp Glu Asp Phe

50 55 60

Val His Leu Arg Val Phe Gln Ser Leu Pro His Glu Asn Lys Pro Leu

65 70 75 80

Thr Leu Ser Asn Tyr Gln Thr Asn Lys Ala Lys His Asp Glu Leu Thr

85 90 95

Tyr Phe

Met Ser Ser Asp Gly Gly Pro Val Leu Gly Gly Val Glu Pro Val Gly

1 5 10 15

Asn Glu Asn Asp Leu His Leu Val Asp Leu Ala Arg Phe Ala Val Thr

20 25 30

Glu His Asn Lys Lys Ala Asn Ser Leu Leu Glu Phe Glu Lys Leu Val

35 40 45

Ser Val Lys Gln Gln Val Val Ala Gly Thr Leu Tyr Tyr Phe Thr Ile

50 55 60

Glu Val Lys Glu Gly Asp Ala Lys Lys Leu Tyr Glu Ala Lys Val Trp

65 70 75 80

Glu Lys Pro Trp Met Asp Phe Lys Glu Leu Gln Glu Phe Lys Pro Val

85 90 95

Asp Ala Ser Ala Asn Ala

100

Met Ser Ser Asp Gly Gly Pro Val Leu Gly Gly Val Glu Pro Val Gly

1 5 10 15

Asn Glu Asn Asp Leu His Leu Val Asp Leu Ala Arg Phe Ala Val Thr

20 25 30

Glu His Asn Lys Lys Ala Asn Ser Leu Leu Glu Phe Glu Lys Leu Val

35 40 45

Ser Val Lys Gln Gln Val Val Ala Gly Thr Leu Tyr Tyr Phe Thr Ile

50 55 60

Glu Val Lys Glu Gly Asp Ala Lys Lys Leu Tyr Glu Ala Lys Val Trp

65 70 75 80

Glu Lys Pro Trp Met Phe Lys Glu Leu Gln Glu Phe Lys Pro Val Asp

85 90 95

Ala Ser Ala Asn Ala

100

Met Ala Glu Glu Ala Gln Ser His Ala Arg Glu Gly Gly Arg His Pro

1 5 10 15

Arg Gln Pro Ala Gly Arg Glu Asn Asp Leu Thr Thr Val Glu Leu Ala

20 25 30

Arg Phe Ala Val Ala Glu His Asn Ser Lys Ala Asn Ala Met Leu Glu

35 40 45

Leu Glu Arg Val Val Lys Val Arg Gln Gln Val Val Gly Gly Phe Met

50 55 60

His Tyr Leu Thr Val Glu Val Lys Glu Pro Gly Gly Ala Asn Lys Leu

65 70 75 80

Tyr Glu Ala Lys Val Trp Glu Arg Ala Trp Glu Asn Phe Lys Gln Leu

85 90 95

Gln Asp Phe Lys Pro Leu Asp Asp Ala Thr Ala

100 105

Met Ala Ala Leu Gly Gly Asn Arg Asp Val Ala Gly Asn Gln Asn Ser

1 5 10 15

Leu Glu Ile Asp Ser Leu Ala Arg Phe Ala Val Glu Glu His Asn Lys

20 25 30

Lys Gln Asn Ala Leu Leu Glu Phe Gly Arg Val Val Ser Ala Gln Gln

35 40 45

Gln Val Val Ser Gly Thr Leu Tyr Thr Ile Thr Leu Glu Ala Lys Asp

50 55 60

Gly Gly Gln Lys Lys Val Tyr Glu Ala Lys Val Trp Glu Lys Pro Trp

65 70 75 80

Leu Asn Phe Lys Glu Leu Gln Glu Phe Lys His Val Gly Asp Ala Pro

85 90 95

Ala

Met Arg Lys His Arg Ile Val Ser Leu Val Ala Ala Leu Leu Val Leu

1 5 10 15

Leu Ala Leu Ala Ala Val Ser Ser Thr Arg Ser Thr Gln Lys Glu Ser

20 25 30

Val Ala Asp Asn Ala Gly Met Leu Ala Gly Gly Ile Lys Asp Val Pro

35 40 45

Ala Asn Glu Asn Asp Leu Gln Leu Gln Glu Leu Ala Arg Phe Ala Val

50 55 60

Asn Glu His Asn Gln Lys Ala Asn Ala Leu Leu Gly Phe Glu Lys Leu

65 70 75 80

Val Lys Ala Lys Thr Gln Val Val Ala Gly Thr Met Tyr Tyr Leu Thr

85 90 95

Ile Glu Val Lys Asp Gly Glu Val Lys Lys Leu Tyr Glu Ala Lys Val

100 105 110

Trp Glu Lys Pro Trp Glu Asn Phe Lys Gln Leu Gln Glu Phe Lys Pro

115 120 125

Val Glu Glu Gly Ala Ser Ala

130 135

Met Arg Leu His Arg Ile Val Ser Leu Val Ala Ala Leu Leu Ile Leu

1 5 10 15

Leu Ala Leu Ala Val Ser Ser Thr Arg Asn Ala Gln Glu Asp Ser Met

20 25 30

Ala Asp Asn Thr Gly Thr Leu Ala Gly Gly Ile Lys Asp Val Pro Gly

35 40 45

Asn Glu Asn Asp Leu His Leu Gln Glu Leu Ala Arg Phe Ala Val Asp

50 55 60

Glu His Asn Lys Lys Ala Asn Ala Leu Leu Gly Phe Glu Lys Leu Val

65 70 75 80

Lys Ala Lys Thr Gln Val Val Ala Gly Thr Met Tyr Tyr Leu Thr Ile

85 90 95

Glu Val Lys Asp Gly Glu Val Lys Lys Leu Tyr Glu Ala Lys Val Trp

100 105 110

Glu Lys Pro Trp Glu Asn Phe Lys Glu Leu Gln Glu Phe Lys Pro Val

115 120 125

Glu Glu Gly Ala Ser Ala

130

Met Ala Gly Ala Arg Gly Cys Val Val Leu Leu Ala Ala Ala Leu Met

1 5 10 15

Leu Val Gly Ala Val Leu Gly Ser Glu Asp Arg Ser Arg Leu Leu Gly

20 25 30

Ala Pro Val Pro Val Asp Glu Asn Asp Glu Gly Leu Gln Arg Ala Leu

35 40 45

Gln Phe Ala Met Ala Glu Tyr Asn Arg Ala Ser Asn Asp Lys Tyr Ser

50 55 60

Ser Arg Val Val Arg Val Ile Ser Ala Lys Arg Gln Leu Val Ser Gly

65 70 75 80

Ile Lys Tyr Ile Leu Gln Val Glu Ile Gly Arg Thr Thr Cys Pro Lys

85 90 95

Ser Ser Gly Asp Leu Gln Ser Cys Glu Phe His Asp Glu Pro Glu Met

100 105 110

Ala Lys Tyr Thr Thr Cys Thr Phe Val Val Tyr Ser Ile Pro Trp Leu

115 120 125

Asn Gln Ile Lys Leu Leu Glu Ser Lys Cys Gln

130 135

Arg Leu Leu Gly Gly Leu Met Glu Ala Asp Val Asn Glu Glu Gly Val

1 5 10 15

Gln Glu Ala Leu Ser Phe Ala Val Ser Glu Phe Asn Lys Arg Ser Asn

20 25 30

Asp Ala Tyr Gln Ser Arg Val Val Arg Val Val Arg Ala Arg Lys Gln

35 40 45

Val Val Ser Gly Met Asn Tyr Phe Leu Asp Val Glu Leu Gly Arg Thr

50 55 60

Thr Cys Thr Lys Ser Gln Ala Asn Leu Asp Ser Cys Pro Phe His Asn

65 70 75 80

Gln Pro His Leu Lys Arg Glu Lys Leu Cys Ser Phe Gln Val Tyr Val

85 90 95

Val Pro Trp Met Asn Thr Ile Asn Leu Val Lys Phe Ser Cys Gln Asp

100 105 110

Met Ala Gly Pro Leu Arg Ala Pro Leu Leu Leu Leu Ala Ile Leu Ala

1 5 10 15

Val Ala Leu Ala Val Ser Pro Ala Ala Gly Ser Ser Pro Gly Lys Pro

20 25 30

Pro Arg Leu Val Gly Gly Pro Met Asp Ala Ser Val Glu Glu Glu Gly

35 40 45

Val Arg Arg Ala Leu Asp Phe Ala Val Gly Glu Tyr Asn Lys Ala Ser

50 55 60

Asn Asp Met Tyr His Ser Arg Ala Leu Gln Val Val Arg Ala Arg Lys

65 70 75 80

Gln Ile Val Ala Gly Val Asn Tyr Phe Leu Asp Val Glu Leu Gly Arg

85 90 95

Thr Thr Cys Thr Lys Thr Gln Pro Asn Leu Asp Asn Cys Pro Phe His

100 105 110

Asp Gln Pro His Leu Lys Arg Lys Ala Phe Cys Ser Phe Gln Ile Tyr

115 120 125

Ala Val Pro Trp Gln Gly Thr Met Thr Leu Ser Lys Ser Thr Cys Gln

130 135 140

Asp Ala

145

Met Ala Ser Pro Leu Arg Ser Leu Leu Phe Leu Leu Ala Val Leu Gly

1 5 10 15

Val Ala Trp Ala Ala Thr Pro Lys Gln Gly Pro Arg Met Leu Gly Ala

20 25 30

Pro Glu Glu Ala Asp Ala Asn Glu Glu Gly Val Arg Arg Ala Leu Asp

35 40 45

Phe Ala Val Ser Glu Tyr Asn Lys Gly Ser Asn Asp Ala Tyr His Ser

50 55 60

Arg Ala Ile Gln Val Val Arg Ala Arg Lys Gln Leu Val Ala Gly Val

65 70 75 80

Asn Tyr Phe Phe Asp Val Glu Met Gly Arg Thr Thr Cys Thr Lys Ser

85 90 95

Gln Thr Asn Leu Thr Asp Cys Pro Phe His Asp Gln Pro His Leu Met

100 105 110

Arg Lys Ala Leu Cys Ser Phe Gln Ile Tyr Ser Val Pro Trp Lys Gly

115 120 125

Thr His Ser Leu Thr Lys Phe Ser Cys Lys Asn Ala

130 135 140

Val Leu Ala Val Ala Trp Ala Gly Thr Ser Arg Pro Pro Pro Arg Leu

1 5 10 15

Leu Gly Ala Pro Gln Glu Ala Asp Ala Ser Glu Glu Gly Val Gln Arg

›REFERENCES · 3 of 4

20 25 30

Ala Leu Asp Phe Ala Val Ser Glu Tyr Asn Lys Gly Ser Asn Asp Ala

35 40 45

Tyr His Ser Arg Ala Ile Gln Val Val Arg Ala Arg Lys Gln Leu Val

50 55 60

Ala Gly Ile Asn Tyr Tyr Leu Asp Val Glu Met Gly Arg Thr Thr Cys

65 70 75 80

Thr Lys Ser Gln Thr Asn Leu Thr Asn Cys Pro Phe His Asp Gln Pro

85 90 95

His Leu Met Arg Lys Ala Leu Cys Ser Phe Gln Ile Tyr Ser Val Pro

100 105 110

Trp Lys Gly Thr His Thr Leu Thr Lys Ser Ser Cys Lys Asn Ala

115 120 125

Met Met Trp Pro Met His Thr Pro Leu Leu Leu Leu Thr Ala Leu Met

1 5 10 15

Val Ala Val Ala Gly Ser Ala Ser Ala Gln Ser Arg Thr Leu Ala Gly

20 25 30

Gly Ile His Ala Thr Asp Leu Asn Asp Lys Ser Val Gln Cys Ala Leu

35 40 45

Asp Phe Ala Ile Ser Glu Tyr Asn Lys Val Ile Asn Lys Asp Glu Tyr

50 55 60

Tyr Ser Arg Pro Leu Gln Val Met Ala Ala Tyr Gln Gln Ile Val Gly

65 70 75 80

Gly Val Asn Tyr Tyr Phe Asn Val Lys Phe Gly Arg Thr Thr Cys Thr

85 90 95

Lys Ser Gln Pro Asn Leu Asp Asn Cys Pro Phe Asn Asp Gln Pro Lys

100 105 110

Leu Lys Glu Glu Glu Phe Cys Ser Phe Gln Ile Asn Glu Val Pro Trp

115 120 125

Glu Asp Lys Ile Ser Ile Leu Asn Tyr Lys Cys Arg Lys Val

130 135 140

Met Ala Gln His Leu Ser Thr Leu Leu Leu Leu Leu Ala Thr Leu Ala

1 5 10 15

Val Ala Leu Ala Trp Ser Pro Lys Glu Glu Asp Arg Ile Ile Pro Gly

20 25 30

Gly Ile Tyr Asn Ala Asp Leu Asn Asp Glu Trp Val Gln Arg Ala Leu

35 40 45

His Phe Ala Ile Ser Glu Tyr Asn Lys Ala Thr Lys Asp Asp Tyr Tyr

50 55 60

Arg Arg Pro Leu Arg Val Leu Arg Ala Arg Gln Gln Thr Val Gly Gly

65 70 75 80

Val Asn Tyr Phe Phe Asp Val Glu Val Gly Arg Thr Ile Cys Thr Lys

85 90 95

Ser Gln Pro Asn Leu Asp Thr Cys Ala Phe His Glu Gln Pro Glu Leu

100 105 110

Gln Lys Lys Gln Leu Cys Ser Phe Glu Ile Tyr Glu Val Pro Trp Glu

115 120 125

Asn Arg Arg Ser Leu Val Lys Ser Arg Cys Gln Glu Ser

130 135 140

Met Ala Arg Pro Leu Cys Thr Leu Leu Leu Leu Met Ala Thr Leu Ala

1 5 10 15

Gly Ala Leu Ala Ser Ser Ser Lys Glu Glu Asn Arg Ile Ile Pro Gly

20 25 30

Gly Ile Tyr Asp Ala Asp Leu Asn Asp Glu Trp Val Gln Arg Ala Leu

35 40 45

His Phe Ala Ile Ser Glu Tyr Asn Lys Ala Thr Glu Asp Glu Tyr Tyr

50 55 60

Arg Arg Pro Leu Gln Val Leu Arg Ala Arg Glu Gln Thr Phe Gly Gly

65 70 75 80

Val Asn Tyr Phe Phe Asp Val Glu Val Gly Arg Thr Ile Cys Thr Lys

85 90 95

Ser Gln Pro Asn Leu Asp Thr Cys Ala Phe His Glu Gln Pro Glu Leu

100 105 110

Gln Lys Lys Gln Leu Cys Ser Phe Glu Ile Tyr Glu Val Pro Trp Glu

115 120 125

Asp Arg Met Ser Leu Val Asn Ser Arg Cys Gln Glu Ala

130 135 140

Ile Ser Thr Asp Tyr Leu Tyr Ile Ser Phe Glu His Glu Thr Leu Ser

1 5 10 15

Cys Leu Gly His Phe Leu Gly Gly Ile Glu Lys Ser Ser Met Glu Glu

20 25 30

Glu Gly Ala Ser Glu Ala Leu Asn Tyr Ala Val Asn Glu Tyr Asn Glu

35 40 45

Lys Asn Ser Asp Leu Tyr Leu Ser Arg Val Val Glu Val Lys Asp Val

50 55 60

Gln Lys Gln Val Val Ala Gly Thr Lys Phe Phe Phe Asp Val Ile Leu

65 70 75 80

Gly Lys Thr Ile Cys Leu Lys Thr Gln Gly Asp Leu Thr Asn Cys Pro

85 90 95

Leu Asn Glu Glu Ala Asp Gln Gln Glu His Glu Phe Cys Ser Phe Val

100 105 110

Val His Asp Ile Pro Trp Glu Asn Tyr Ile Val Leu Leu Ser Ser Ser

115 120 125

Cys His Ser Ile

130

Met Ala Trp Pro Leu Cys Thr Leu Leu Leu Leu Leu Ala Thr Gln Ala

1 5 10 15

Val Ala Leu Ala Trp Ser Pro Gln Glu Glu Asp Arg Ile Ile Glu Gly

20 25 30

Gly Ile Tyr Asp Ala Asp Leu Asn Asp Glu Arg Val Gln Arg Ala Leu

35 40 45

His Phe Val Ile Ser Glu Tyr Asn Lys Ala Thr Glu Asp Glu Tyr Tyr

50 55 60

Arg Arg Leu Leu Arg Val Leu Arg Ala Arg Glu Gln Ile Val Gly Gly

65 70 75 80

Val Asn Tyr Phe Phe Asp Ile Glu Val Gly Arg Thr Ile Cys Thr Lys

85 90 95

Ser Gln Pro Asn Leu Asp Thr Cys Ala Phe His Glu Gln Pro Glu Leu

100 105 110

Gln Lys Lys Gln Leu Cys Ser Phe Gln Ile Tyr Glu Val Pro Trp Glu

115 120 125

Asp Arg Met Ser Leu Val Asn Ser Arg Cys Gln Glu Ala

130 135 140

Met Leu Thr Ile Lys Asp Gly Thr Leu Leu Ile His Leu Leu Leu Phe

1 5 10 15

Ser Val Val Ala Leu Val Gln Leu Gln Gly Ala Lys Ser Ala Arg Ala

20 25 30

Lys Asn Pro Ser Lys Met Glu Ser Lys Thr Gly Glu Asn Gln Asp Arg

35 40 45

Pro Val Leu Leu Gly Gly Trp Glu Asp Arg Asp Pro Lys Asp Glu Glu

50 55 60

Ile Leu Glu Leu Leu Pro Ser Ile Leu Met Lys Val Asn Glu Gln Ser

65 70 75 80

Asn Asp Glu Tyr His Leu Met Pro Ile Lys Leu Leu Lys Val Ser Ser

85 90 95

Gln Val Val Ala Gly Val Lys Tyr Lys Met Asp Val Gln Val Ala Arg

100 105 110

Ser Gln Cys Lys Lys Ser Ser Asn Glu Lys Val Asp Leu Thr Lys Cys

115 120 125

Lys Lys Leu Glu Gly His Pro Glu Lys Val Met Thr Leu Glu Val Trp

130 135 140

Glu Lys Pro Trp Glu Asn Phe Met Arg Val Glu Ile Leu Gly Thr Lys

145 150 155 160

Glu Val

Ile Pro Gly Gly Leu Ser Pro Arg Asp Val Thr Asp Pro Asp Val Gln

1 5 10 15

Glu Ala Ala Ala Phe Ala Val Glu Lys Tyr Asn Ala Gly Ser Lys Asn

20 25 30

Asp Tyr Tyr Phe Lys Glu Arg Arg Val Val Glu Ala Gln Ser Gln Val

35 40 45

Val Ser Gly Val Lys Tyr Tyr Leu Met Met Glu Leu Leu Lys Thr Thr

50 55 60

Cys Lys Lys Thr Val Gly Arg Pro Lys Gly Tyr Gln Glu Ile Gln Asn

65 70 75 80

Cys Asn Leu Pro Pro Glu Asn Gln Gln Glu Glu Ile Thr Cys Arg Phe

85 90 95

Glu Val Trp Ser Arg Pro Trp Leu Pro Ser Thr Ser Leu Thr Lys

100 105 110

Met Asn Val Val Lys Ser Leu Cys Ile Leu Gly Leu Val Leu Val Ser

1 5 10 15

Leu Ile Ala Thr Gln Ala Ala Asp Glu Gln Val Val Gly Gly Val Ser

20 25 30

Gln Leu Glu Gly Asn Ser Arg Lys Glu Ala Leu Glu Leu Leu Asp Ala

35 40 45

Thr Leu Ala Gln Leu Ala Thr Gly Asp Gly Pro Ser Tyr Lys Ala Ile

50 55 60

Asn Val Thr Ser Val Thr Gly Gln Val Val Ala Gly Ser Leu Asn Thr

65 70 75 80

Tyr Glu Val Glu Leu Asp Asn Gly Ser Asp Lys Lys Gln Cys Thr Val

85 90 95

Lys Ile Trp Thr Gln Pro Trp Leu Lys Glu Asn Gly Thr Asn Ile Lys

100 105 110

Ile Lys Cys Ser Gly Asp Asp Gly Glu Leu Asp Arg Thr Trp

115 120 125

Met Lys Tyr Val Leu Ile Leu Cys Val Ile Thr Leu Ala Thr Val Ala

1 5 10 15

Tyr Ala Gln Pro Gln Cys Val Gly Cys Pro Ser Glu Val Lys Gly Asp

20 25 30

Lys Leu Lys Gln Ser Glu Glu Thr Leu Asn Lys Ser Leu Ser Lys Leu

35 40 45

Ala Ala Gly Asp Gly Pro Thr Tyr Lys Leu Val Lys Ile Asn Ser Ala

50 55 60

Thr Thr Gln Val Val Ser Gly Ser Lys Asp Val Ile Asn Ala Asp Leu

65 70 75 80

Lys Asp Glu Asn Asp Lys Thr Lys Thr Cys Asp Ile Thr Ile Trp Ser

85 90 95

Gln Pro Trp Leu Glu Asn Gly Ile Glu Val Thr Phe Asn Cys Pro Gly

100 105 110

Glu Pro Lys Val Val Lys Lys His Ser Ala

115 120

ATGTCGAGCG ACGGAGGGCC GGTGCTTGGC GGCGTCGAGC CGGTGGGGAA CGAGAACGAC 60

›REFERENCES · 4 of 4

CTCCACCTCG TCGACCTCGC CCGCTTCGCC GTCACCGAGC ACAACAAGAA GGCCAATTCT 120

CTTCTAGAGT TCGAGAAGCT TGTGAGTGTG AGGCAGCAAG TTGTCGCTGG CACTTTGTAC 180

TATTTCACAA TTGAGGTGAA GGAAGGGGAT GCCAAGAAGC TCTATGAAGC TAAGGTCTGG 240

GAGAAACCAT GGATGTTCAA GGAGCTCCAG GAGTTCAAGC CTGTCGATGC CAGTGCAAAT 300

GCC 303

GGCCGAGGCG CATCGCGCAG GGGGAGAAGG GGAGGAGAAG ATGTCGAGCG ACGGAGGGCC 60

GGTGCTTGGC GGCGTCGAGC CGGTGGGGAA CGAGAACGAC CTCCACCTCG TCGACCTCGC 120

CCGCTTCGCC GTCACCGAGC ACAACAAGAA GGCCAATTCT CTTCTAGAGT TCGAGAAGCT 180

TGTGAGTGTG AGGCAGCAAG TTGTCGCTGG CACTTTGTAC TATTTCACAA TTGAGGTGAA 240

GGAAGGGGAT GCCAAGAAGC TCTATGAAGC TAAGGTCTGG GAGAAACCAT GGATGTTCAA 300

GGAGCTCCAG GAGTTCAAGC CTGTCGATGC CAGTGCAAAT GCCTAAGGCC CATCTCGATC 360

CTATGTGTAT CAAGTTATCT TGTTGATGGG GAATAATATG TTGTGGATAT AGCTATTGGA 420

CATGTTAAAT TATCCACATG ATAATATGGC TTGGATATAA GGATCTCACA CGATAATATG 480

GCTTGGATAT ATAGCTATAA AGATTTACCT ATGGCATATT CAATGTGTAT TAGTACTAAG 540

TAAGAATGAT TGCAAGGTGT ATTAACTACA AATATTGCAA TAAAAGTCCC TGTTAC 596

ACATGTCGAA TTCTTAGGCA TTTGCACTGG C 31

GAGGAGCCCG GGTCGAGCGA CGGA 24

CTCGAACTCT AGAAGAGAAT TGGCCTTGTT GTG 33

AATTCTCTTC TAGAGTTC 18

CACGTGAATT CATGAAGTTC CTTATCCTTA CCGCGCTCTG CGC 43

CACGGCCTGC AGTTAGACCT TGGCCTTTCC GGCGACAACT GC 42

GAACAGCGTA GGCAGAGACT CCGAAGTGCT TGTCCTTGGC GT 42

GAGTCTCTGC CTACGCTGTT C 21

ACTATGGATC CGCAGCACTC GGTGGCAATC G 31

ATATTAAGCT TACACTATGC AGGTGCATTC CC 32

CTTGGCGGCG TCCCGGTGGG GAAC 24

AAACCATGGA TGTTCAAGGA GCTC 24

AAACCATGGG ACTTCAAGCC T 21

GAGAAACCAA ACATGGACTT C 21

GAGAAACCAG CGATGGACTT C 21

TGGGAGAAAG CATGGATGGA C 21

AAGGAGCTCC TGGAGTTCAA G 21

GACTTCAAGA TACTCCAGGA G 21

TGGGAGAAAC TGCCATGGAT G 21

AAGCTCTATG AAAAGGTCTG G 21

GTCTGGGAGA AATAGTGGAT GGACTTCAAC GAACTCCAG 39

GTCTGGGAGA AACCATAGAT GGACTTCAAC GAACTCCAG 39

GTCTGGGAGA AACCATGGAT GTAGTTCAAC GAACTCCAG 39

GATCCGATGA CGATGACAAA CACCTCGTC 29

GACGAGGTGT TTGTCATCGT CATC 24

Gln Val Val Ala Gly

1 5

Gln Leu Val Ala Gly

1 5

Asp Asp Asp Asp Lys

1 5

Ser Glu Asp Arg Ser Arg Leu Leu Gly Ala Pro Val Pro Val Asp

1 5 10 15

Tyr Ser Ser Arg Val Val Arg Val Ile Ser Ala Lys Arg Gln Leu Val

1 5 10 15

Ser Gly Ile Lys Tyr Ile Leu Gln

20

Phe Val Val Tyr Ser Ile Pro Trp Leu Asn Gln Ile Lys Leu Leu Glu

1 5 10 15

Ser Lys Cys Gln

20

Arg Gln Leu Val Ser Gly Ile Lys Tyr

1 5

Ser Ile Pro Trp Leu Asn Gln

1 5

AGCGAGGACC GCTCCCGGCT CCTGGGGGCT CCA 33

GTCGTCGTTC TCATCTACAG GCACTGGAGC CCCCAG 36

GAGAACGACC TCCACCTCGT C 21

GGCATTTGCA CTGGCATCGA C 21

AAGGCCAATT CTCTTTACTC CAGCCGGGTG GTGCGGGTCA TC 42

CACGAGCTGC CGCTTGGCGC TGATGACCCG CAC 33

CGGCAGCTCG TGTCTGGAAT CAAGTACATC 30

ATCCCCTTCC TTCACCTGCA GGATGTACTT GATTCCAGA 39

ATGTCGAGCG ACGGAGGGCC GGTG 24

AAGAGAATTG GCCTTCTTGT T 21

GTGAAGGAAG GGGATGCCAA GAAG 24

GCCAAGAAGC TCTATTTTGT AGTGTACAGT ATTCCTTGGC TA 42

CTGGCACTTG CTTTCCAGCA GTTTAATTTG GTTTAGCCAA GGAAT 45

ATAGAGCTTC TTGGCATCCC CTTCCTT 27

AAGGTCTGGT CGATACCATG GCTGAACCAA AAGGAGCCT 39

AGTGTGAGGC GGCAACTTGT CTCTGGCATT AAGTACTACT TCACA 45

›Tables in the description — 41
31 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO31
24 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO32
33 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO33
18 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO34
43 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO35
42 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO36
42 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO37
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO38
31 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO39
32 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO40
24 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO41
24 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO42
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO43
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO44
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO45
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO46
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO47
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO48
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO49
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO50
39 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO51
39 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO52
39 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO53
29 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO54
24 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “PRIMER”
NO55
33 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO64
36 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO65
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO66
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO67
42 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO68
33 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO69
30 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO70
39 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO71
24 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO72
21 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO73
24 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO74
42 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO75
45 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO76
27 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO77
39 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO78
45 base pairsnucleic acidsinglelinear
other nucleic acid/desc = “Primer”
NO79
4 of 13 part labels are ours — the grant heads the rest

Claims as granted

15 claims

Log in to read the claims of this application.

Log in to unlock

Classifications

36 codes
IPC · International Patent Classification
Section A — Human necessities
  • A01N63/60
  • A01N63/50
  • A61K48/00
  • A61P31/04
  • A01H5/00
  • A61K38/55
  • A01N37/46
  • A01K67/027
  • A61P43/00
  • A01N61/00
Section C — Chemistry; metallurgy
  • C12N15/15
  • C12N9/99
  • C12R1/91
  • C12N15/62
  • C07K14/81
  • C12N15/63
  • C12N15/09
  • C12N1/21
  • C12N15/00
  • C12R1/19
  • C12P21/02
  • C12N9/50
  • C12N15/82
  • C12N15/29
USPC · US Patent Classification
800/279530/370800/298800/278536/24.1536/23.6435/320.1435/410435/69.2435/468435/69.1435/419

Claim changes

Soon
Coming soonHow the claims changed between publication and grant

See which claims were amended, added or cancelled during examination, with every added and removed word marked.

AmendedAddedCancelledUnchanged

The published claims of this application are not paired with the granted ones in what we hold.

File wrapper

⤢ drag to zoom199619971998199920002001200220032004USPTOApplicantRestriction requirementResponse after non-finalNotice of appeal filedNon-final rejectionNon-final rejection
USPTOApplicanthover for detail · click to open
Pendency
8.2 y
2,983 days filing → grant
Office actions
4
after a restriction
Responses
6
no RCE
Examiner
Elizabeth F. McElwain
art unit 1638 · TC 1600
Citations: 21 back · 5 forward

See the full prosecution history — every USPTO and applicant action on this file, in order.

Log in to unlock

Documents

Log in to open the documents of this file: the application as filed, every office action and response, the notice of allowance.

Log in to unlock

Chain of title

⤢ drag to zoom1998200020022004200620082010201220142016Owner 1
Titlehover for detail · click to open

See the full assignment history — every owner this patent has passed through, with recordation dates and reel/frame numbers.

Log in to unlock