Ehrlichia canis DIVA (differentiate infected from vaccinated animals)

This application claims the benefit of U.S. Ser. No. 60/984,019, which was filed on Oct. 31, 2007, and is incorporated herein by reference in its entirety.

Sequence Listing

This document incorporates by reference a sequence listing in text format. The text file “04 — 947DUS_SL.corrected for filing..txt” was created on Sep. 1, 2009, and is 85 KB.

The Ehrlichia are obligate intracellular pathogens that infect circulating white blood cells in mammalian hosts. Ehrlichia canis can infect canines and humans and cause canine monocytic ehrlichiosis (CME) and human monocytic ehrlichiosis (HME), respectively. The canine disease is characterized by fever, lymphadenopathy, weight loss, and pancytopenia. In humans the disease is characterized by fever, headache, mylagia, and leukopenia. Early detection and treatment are important for treating both canine and human ehrlichiosis.

In one embodiment the invention provides a method of distinguishing between animals that have been (a) infected with Ehrlichia canis ; and (b) animals that have not been infected with E. canis regardless of whether the animal has been vaccinated for E. canis . The method comprises

(a) contacting a biological sample from an animal with one or more first purified polypeptides that do not specifically bind to antibodies that are a component of the animal's immune response to an E. canis vaccine; wherein the one or more first purified polypeptides have at least 95% identity to SEQ ID NOs:22-33 and wherein the one or more first purified E. canis polypeptides specifically bind an antibody that is specific for E. canis ; and (b) detecting whether antibodies in the biological sample specifically bind to the one or more first purified E. canis polypeptides.

If antibodies in the biological sample specifically bind to the one or more first purified polypeptides, then the animal is infected with E. canis . The one or more first purified polypeptides can be about 15 to about 75 amino acids in length. The one or more first purified polypeptides can be linked to a heterologous amino acid sequence, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof. The method can further comprise determining whether antibodies in the biological sample specifically bind to one or more second purified E. canis polypeptides that are an element of an E. canis vaccine. If antibodies in the biological sample specifically bind to the one or more first purified E. canis polypeptides and specifically bind to the one or more second purified E. canis polypeptides, then the animal has been infected with E. canis and the vaccination status for E. canis is unknown. If antibodies in the sample do not specifically bind to the one or more first purified E. canis polypeptides and specifically bind to the one or more second purified E. canis polypeptides, then the animal has not been infected with E. canis and has been vaccinated for E. canis . If antibodies in the sample do not specifically bind to the one or more first purified polypeptides and do not specifically bind to the one or more second purified polypeptides then the animal has not been vaccinated for E. canis and has not been infected by E. canis.

Yet another embodiment of the invention provides a method of determining an animal's vaccination and infection status for E. canis . The method comprises:

(a) contacting a biological sample from an animal with one or more first purified polypeptides that do not specifically bind to antibodies that are a component of the animal's immune response to an E. canis vaccine, wherein the one or more first purified polypeptides have at least 95% identity to SEQ ID NOs:22-33 and wherein the one or more first purified polypeptides specifically bind an antibody that is specific for E. canis , and one or more second purified polypeptides that specifically bind to an antibody that is a component of the animal's immune response to an E. canis vaccine; and (b) detecting whether antibodies in the biological sample specifically bind to the one or more first purified polypeptides and to the one or more second purified polypeptides.

If antibodies in the biological sample specifically bind to the one or more first purified E. canis polypeptides and specifically bind to the one or more second purified E. canis polypeptides, then the animal has been infected with E. canis and the vaccination status for E. canis is unknown. If antibodies in the sample do not specifically bind to the one or more first purified E. canis polypeptides and specifically bind to the one or more second purified E. canis polypeptides, then the animal has not been infected with E. canis and has been vaccinated for E. canis . If antibodies in the sample do not specifically bind to the one or more first purified polypeptides and do not specifically bind to the one or more second purified polypeptides then the animal has not been vaccinated for E. canis and has not been infected by E. canis . The one or more first purified polypeptides can be about 15 to about 75 amino acids in length. The one or more first purified polypeptides can be linked to a heterologous amino acid sequence, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof.

Still another embodiment of the invention provides a method for determining the presence of an antibody or antigen-binding fragments thereof that are specific for E. canis , in a test sample. The method comprises:

(a) contacting the test sample with one or more purified polypeptides that have at least 95% identity to SEQ ID NOs:22-33 wherein the one or more purified polypeptides are about 15 to about 75 amino acids in length, and wherein the one or more first purified polypeptides specifically bind an antibody that is specific for E. canis , under conditions suitable for specific binding of the one or more purified polypeptides to the antibodies or antigen-binding fragments thereof, and (b) detecting the presence of specific binding of the one or more purified polypeptides to the antibodies or antigen-binding fragments thereof.

The presence of specific binding of the one or more purified polypeptides to the antibodies or antigen-binding fragments indicates the presence of the antibodies or antigen-binding fragments thereof specific for E. canis in the test sample. The one or more purified polypeptides can be linked to a heterologous amino acid sequence, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof. The method can further comprise detecting the amount of specific binding. The one or more purified polypeptides can be immobilized to a solid support.

Even another embodiment of the invention provides a composition comprising:

(a) one or more purified polypeptides consisting of SEQ ID NO:22-33; or (b) one or more purified polypeptides having at least 95% identity to SEQ ID NOs:22-33 wherein the one or more purified polypeptides are about 15 to about 75 amino acids in length, and wherein the one or more purified polypeptides specifically bind an antibody that is specific for E. canis; (c) SEQ ID NO:33, wherein the X at position 1 is absent or C, the X at position 4 is H or Q, the X at position 25 is D or G, and the X at position 36 is E or G; (d) amino acids 1-27 of SEQ ID NO:33, wherein the X at position 1 is C, the X at position 4 is H, the X at position 25 is D or G; (e) amino acids 13-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G; and a C is optionally present at the amino terminus; (f) amino acids 24-49 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (g) amino acids 1-27 of SEQ ID NO:33, wherein the X at position 1 is C or absent, and wherein the X at position 25 is D or G; (h) amino acids 13-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (i) amino acids 24-49 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (j) amino acids 13-27 of SEQ ID NO:33, wherein the X at position 25 is D or G, and a C is optionally present at the amino terminus; (k) amino acids 24-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (l) amino acids 13-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (m) amino acids 24-49 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (n) amino acids 24-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; or (o) combinations of (a)-(n).

The one or more purified polypeptides can be in a multimeric form. The one or more purified polypeptides can be linked to a heterologous protein, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof.

Another embodiment of the invention provides a method of generating an immune response in an animal comprising administering one or more purified polypeptides having at least 95% identity to SEQ ID NOs:22-33 or a combination thereof to the animal, wherein the one or more purified polypeptides generate an immune response in the animal. The one or more purified polypeptides can be about 15 to about 75 amino acids in length. The one or more purified polypeptides can be in a multimeric form. The one or more purified polypeptides can be linked to a heterologous protein, an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof.

Still another embodiment of the invention provides a method for the prophylaxis, treatment, or amelioration of an Ehrlichia canis infection in an animal comprising administering to the animal:

(a) one or more purified polypeptides having at least 95% sequence identity to SEQ ID NOs:22-33, or a combination thereof; or (b) one or more nucleic acids encoding one or more purified polypeptides comprising SEQ ID NOs:22-33, or a combination thereof; or (c) one or more antibodies that specifically bind one or more purified polypeptides comprising SEQ ID NOs:22-33, or a combination thereof; whereby the E. canis infection is prevented, ameliorated, or treated.

Yet another embodiment of the invention provides a method of monitoring treatment of an E. canis infection in a patient comprising: (a) determining the level of anti- E. canis antibodies in a first sample from a patient prior to or in the early stages of a treatment for an E. canis infection by a method of claim 10 ; (b) determining the level of anti- E. canis antibodies in a second sample from the patient after treatment is effected by a method of claim 10 ; and (c) comparing the amount of anti- E. canis antibodies in the first sample with the amount of anti- E. canis antibodies in the second sample to assess a change and thereby monitor treatment.

FIG. 1 shows SNAP® 3Dx® Assay (reversible flow chromatographic assay) evaluation of laboratory beagles. The SNAP® device used as described by manufacturer. “Pre” sample is from day 0. “Post” sample is from day 42. The E. canis positive spot became positive in all 4 dogs for the day 42 sample. Similar results were observed for the day 70 sample.

FIG. 2 shows a gel of E. canis proteins separated using 2D gel electrophoresis. Stained with BIOSAFE™ Coomassie Blue (Bio-Rad Inc.).

FIG. 3 shows a western blot of E. canis proteins using dog sera harvested at day 0. The plasma dilution is 1:100. These dogs were negative for reactivity with E. canis antigens.

FIG. 4 shows a western blot of E. canis proteins using dog sera from a pool of four vaccinated animals. The sera dilution is 1:100.

FIG. 5 shows a western blot of E. canis proteins using dog plasma from a pool of infected animals. The sera dilution is 1:1000.

FIG. 6 shows a western blot of six different E. canis DIVA antigens expressed in E. coli and probed with either dog sera from a pool of four infected animals (A) or dog sera pooled from four vaccinated animals (B). Sera dilutions were 1:100 for vaccinated animals or 1:500 for the infected animals. The DIVA antigens represented include: (1) 200 kDa antigen, (2) Ribosomal protein L1, (3a and 3b) “ATPase”—two different segments, (4) 120 kDa antigen, (5) Heat shock proteins/p16 antigen.

FIG. 7 demonstrates that cloned p16 antigen is recognized by sera from dogs infected with E. canis but not those that were vaccinated (shown as “challenged sera”). Lysates from uninduced (U) or induced (I) bacteria transformed with a vector expressing the p16 antigen or the original genomic fragment (+C) were separated by SDS-PAGE and transferred to nitrocellulose for western blot analysis.

FIG. 8 demonstrates detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO:23 in dogs over a time course including infection, treatment, and recovery.

FIGS. 9A-B demonstrate detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO:10 in two dogs that have not been vaccinated for E. canis over a time course of infection.

FIGS. 10A-C demonstrate detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO:10 in three dogs that have been vaccinated (RIBI adjuvant) for E. canis over a time course of infection.

FIGS. 11A-C demonstrate detection of antibodies specific for E. canis using a polypeptide shown in SEQ ID NO: 10 in three dogs that have been vaccinated (RIBI+BCG adjuvant) for E. canis over a time course of infection.

Ehrlichia canis antigens are disclosed that can be used to differentiate E. canis naturally-infected animals from animals that have been vaccinated against with E. canis . “Vaccinated” means the administration of a vaccine composition that can prevent or ameliorate the effects of infection by a pathogen by establishing or improving immunity to the pathogen. Vaccine compositions can comprise dead, inactivated or attenuated pathogens or purified products or portions of the pathogen. Vaccination is not necessarily 100% effective.

Before describing the present invention in detail, a number of terms will be defined. As used herein, the singular forms “a,” “an”, and “the” include plural referents unless the context clearly dictates otherwise.

As used herein, the term “polypeptide” refers to a compound of a single chain or a complex of two or more chains of amino acid residues linked by peptide bonds. The chain(s) may be of any length and can comprise a fusion protein. Although “protein” is often used in reference to relatively large polypeptides, and “peptide” is often used in reference to small polypeptides, usage of these terms in the art overlaps and varies. The term “polypeptide” as used herein thus refers interchangeably to peptides, polypeptides, proteins, or fusion proteins unless otherwise noted. The term “amino acid” refers to a monomeric unit of a peptide, polypeptide or protein. The term “polypeptides” can refer to one or more of one type of polypeptide (a set of polypeptides). “Polypeptides” can also refer to mixtures of two or more different types of polypeptides (a mixture of polypeptides). The terms “polypeptides” or “polypeptide” can each also mean “one or more polypeptides.”

Polypeptides of the invention can be “isolated.” An isolated polypeptide is a polypeptide that is not immediately contiguous with one or both of the amino and carboxy flanking amino acid sequences that it is naturally associated with. In particular, “an isolated polypeptide shown in SEQ ID NOs:22-33” means that the polypeptide is not immediately contiguous with one or both of the amino and carboxy flanking amino acid sequences that it is naturally associated with (where the polypeptide is a naturally occurring polypeptide) in an E. canis protein molecule.

As used herein, “antigen” as used herein refers to a molecule against which a subject can initiate a humoral and/or cellular immune response. Antigens can be any type of biologic molecule including, for example, simple intermediary metabolites, sugars, lipids, and hormones as well as macromolecules such as complex carbohydrates, phospholipids, nucleic acids and proteins. In the compositions and methods of the invention, an antigen can be a polypeptide, e.g., one comprising at least about six or more amino acids.

As used herein, a “derivative” of an E. canis antigen polypeptide, or an antigen or polypeptide that is “derived from” an E. canis antigen or polypeptide, refers to a antigen or polypeptide in which the native form has been purified, modified or altered. Such modifications include, but are not limited to: amino acid substitutions, modifications, additions or deletions; alterations in the pattern of lipidation, glycosylation or phosphorylation; reactions of free amino, carboxyl, or hydroxyl side groups of the amino acid residues present in the polypeptide with other organic and non-organic molecules; and other modifications, any of which may result in changes in primary, secondary or tertiary structure.

A “biological sample” is any sample from an animal that is expected to contain immunoglobulins. For example, a biological sample can be plasma, blood, serum, saliva, urine, feces, wound exudate, cerebrospinal fluid (CSF), semen, sputum, as well as tissue extracts, and cell extracts. In one embodiment of the invention a test sample can be obtained from an animal such as a horse, dog, cow, llama, sheep, goat, deer, elk, rodent or any other animal. A human is considered to be an animal herein. These examples are not to be construed as limiting the sample types or animals that are applicable to the present invention.

An “infection,” such as in an E. canis infection, means that an animal has been exposed to E. canis , regardless of whether the animal exhibits clinical symptoms of E. canis . A natural infection refers to an exposure that occurs as a result of one of the natural transmission methods for E. canis , such as transmission by ticks. An infection does not include an exposure to E. canis through vaccination.

A “polypeptide or antigen that is not an element of an E. canis vaccine” is any E. canis polypeptide or antigen that is not present in a particular E. canis vaccine or vaccines. A “polypeptide or antigen that is not an element of an E. canis vaccine” is also any E. canis polypeptide or antigen that is not an immunogenically active portion of an E. canis vaccine. That is, the polypeptide or antigen may be present in the vaccine, but an immune response against the polypeptide or antigen (e.g., the generation of antibodies that specifically bind to the polypeptide or antigen) is not generated in response to administration of the E. canis vaccine. Elements of the vaccine(s) can be portions of a subunit vaccine that includes less than the entire bacterium; these portions can be chemically synthesized or expressed recombinantly before becoming part of the vaccine, and these portions can be encoded by one or more vectors that express an immunogenic composition in vivo.

An “antibody that is a component of an animal's immune response to an E. canis vaccine” refers to an antibody that is elicited as the result of a vaccination with an E. canis vaccine. These antibodies can be identical to or similar to antibodies elicited as the result of a natural E. canis infection. These antibodies will be maintained at a sufficient titer and so as to provide a protective and neutralizing effect against the bacteria. A successful vaccination produces a measurable level of the antibody (or antibodies) that is elicited by a component of the E. canis vaccine. Examples of E. canis antigens that elicit antibodies that can be a component of an animal's immune response to an E. canis vaccine are p28-1, p28-2, p28-3, p28-4, p28-5, p28-6, p28-7, p28-8, p28-9 (see, U.S. Pat. Nos. 6,660,269; 6,458,942; 6,403,780; 6,392,023), proA, ProB, mmpA, cytochrome oxidase (see, U.S. Pat. Publ. 20040170972), p43 (see, U.S. Pat. No. 6,355,777), which is the N-terminal portion of p153, a glycoprotein (see, U.S. Pat. Publ. 2004/0121433), p153, and p30-1, p30-2, p30-3, p30-4, p30-5, p30-6, p30-7, p30-8, p30-9, p30-10, p30-11, p30-12, p30-13, p30-14, p30-15, p30-16, p30-17, p30-18, p30-19, p30-20 (Ohashi et al. 2001, Infection and Immunity 69(4): 2083-91).

An immune response is the development in an organism of a cellular and/or antibody mediated immune response to an antigen such as a polypeptide. Usually such a response includes, but is not limited to, one or more of the following: production of antibodies, B cells, helper T cells, suppressor T cells, and/or cytotoxic T cells. An immune response can be detected using any of several assays known to those with skill in the art.

Polypeptides of the Invention

Biological samples from animals that have been vaccinated against E. canis have the potential for producing a positive result in a test for E. canis infection due to the presence of antibodies produced in response to the vaccine. In one aspect, the invention provides a method of distinguishing between animals that have been infected with E. canis and those that have not been infected with E. canis , regardless of whether the animal has been vaccinated for E. canis . Methods include contacting a biological sample from the animal with an antigen derived from E. canis that does not specifically bind to an antibody that is a component of the animal's antibody response to a particular E. canis vaccine, but that does specifically bind to an antibody that is generated in response to infection by E. canis.

The development of E. canis antibodies in an animal against a vaccine is dependent upon the particular vaccine used to vaccinate the animal. The difference in the immune response between animals that are vaccinated against E. canis and animals that are naturally or experimentally infected with E. canis provides a means for determining whether an animal is naturally or experimentally infected with E. canis , regardless of whether the animal has been vaccinated for E. canis . Therefore, using the methods of the invention, animals that have been infected with E. canis can be distinguished from animals that have not been infected with E. canis and/or have been vaccinated against E. canis . Antigens of the invention, their immunodominant regions, and epitopes can be used in the methods of the invention. These compositions can be referred to as E. canis DIVA antigens (Differentiate Infected from Vaccinated Animals). An E. canis DIVA antigen induces an immune response, e.g., the production of specific antibodies, in an animal that is different from the immune response induced in the animal by a particular E. canis vaccine.

Accordingly, detection of specific binding between an E. canis DIVA antigen and an antibody that is not a component of an animal's immune response to a particular vaccine can indicate a natural or experimental E. canis infection. The absence of such binding can indicate the absence of E. canis infection. In addition, a second, separate antigen, such as an E. canis antigen that specifically binds an antibody that is a component of an animal's immune response to a particular E. canis vaccine, can be used to detect antibodies produced in response to vaccination (herein referred to as “an E. canis vaccine antigen”). An E. canis vaccine antigen not only specifically binds an antibody that is a component of an animal's immune response to a particular E. canis vaccine, but can also specifically bind to antibodies that are a component of an animal's immune response to infection by E. canis . If an antibody specific for an E. canis vaccine antigen is detected, then the animal has been vaccinated and/or infected. The detection of neither antibody indicates no infection and no vaccination. As such, various combinations of separate capture reagents can lead to a determination of the vaccination and/or infection status of the test subject.

In one aspect, a method of the invention includes contacting a biological sample from an animal with an antigen that is a part of the E. canis bacteria, but is not an element of a particular E. canis vaccine. In another aspect, a method of the invention includes contacting a biological sample from an animal with an antigen that is present in or part of E. canis bacteria and an E. canis vaccine, wherein an immune response against the antigen (e.g., the generation of antibodies that specifically bind to the antigen) is generated in response to infection with the E. canis bacteria, but not in response to administration of the E. canis vaccine. In another aspect, a biological sample from an animal is analyzed to detect the presence or absence of antibodies specific for an E. canis DIVA antigen, and the presence or absence of antibodies specific for an E. canis vaccine antigen. It is then determined that the animal has not been infected and has not been or vaccinated by determining the absence of such antibodies.

In one aspect of the invention, a DIVA antigen is not an element of an E. canis vaccine. In another aspect of the invention, a DIVA antigen is part of an E. canis vaccine, but an immune response (e.g., the generation of an antibody that specifically binds the DIVA antigen) is not generated in response to administration of the E. canis vaccine. The vaccination or infection status of an animal can be determined by detecting whether antibodies in the sample specifically bind to one or more E. canis vaccine antigens and whether antibodies in the sample specifically bind to one or more DIVA antigens. If antibodies in the sample specifically bind to one or more of the vaccine antigens and specifically bind to one or more of the DIVA antigens, then the animal is infected with E. canis and the vaccination status of the animal is unknown. If antibodies in the sample specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is vaccinated for E. canis and is not infected with E. canis . If antibodies in the sample do not specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is not infected with E. canis and is not vaccinated for E. canis.

One aspect of the invention provides a method of distinguishing between animals that have been (a) infected with Ehrlichia canis ; and (b) animals that have not been infected with E. canis regardless of their E. canis vaccine status. The method comprises contacting a biological sample from an animal with a first purified E. canis polypeptide that does not substantially specifically bind to antibodies that are a component of the animal's immune response to an E. canis vaccine; wherein the first purified E. canis polypeptide comprises SEQ ID NOs:22-33 or combinations thereof and detecting whether antibodies in the sample specifically bind to the first purified E. canis polypeptide. If antibodies in the sample specifically bind to the first purified E. canis polypeptide, then the animal is infected with E. canis ; and if antibodies in the sample do not substantially specifically bind to the first purified E. canis polypeptide, then the animal is not infected with E. canis.

The method can further comprise determining whether antibodies in the sample specifically bind to a second purified E. canis polypeptide that comprises an E. canis vaccine antigen. If antibodies in the sample specifically bind to one or more of the E. canis vaccine antigens and specifically bind to one or more of the DIVA antigens, then the animal is infected with E. canis and the vaccination status of the animal is unknown. If antibodies in the sample specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is vaccinated for E. canis and is not infected with E. canis . If antibodies in the sample do not specifically bind to one or more of the E. canis vaccine antigens and do not specifically bind to one or more of the DIVA antigens, then the animal is not infected with E. canis and is not vaccinated for E. canis . In one embodiment of the invention antibodies in test samples do not substantially specifically bind to DIVA antigens and/or E. canis vaccine antigens. Substantially no specific binding is an amount of binding that would be considered a negative result by one of skill in the art.

One aspect of the invention provides a method of determining an animal's vaccination and infection status for E. canis . The method comprises:

(a) contacting a biological sample from an animal with a first purified polypeptide that does not substantially specifically bind to antibodies that are a component of the animal's immune response to an E. canis vaccine, wherein the first purified polypeptide comprises SEQ ID NOs:22-33 or combinations thereof, and a second polypeptide that specifically binds to an antibody that is a component of the animal's immune response to an E. canis vaccine; (b) detecting whether antibodies in the sample specifically bind to the first and second purified polypeptides;

wherein if antibodies in the biological sample specifically bind to the one or more first purified E. canis polypeptides and specifically bind to the one or more second purified E. canis polypeptides, then the animal has been infected with E. canis and the vaccination status for E. canis is unknown; wherein if antibodies in the sample do not specifically bind to the one or more first purified E. canis polypeptides and specifically bind to the one or more second purified E. canis polypeptides, then the animal has not been infected with E. canis and has been vaccinated for E. canis ; and wherein if antibodies in the sample do not specifically bind to the one or more first purified polypeptides and do not specifically bind to the one or more second purified polypeptides then the animal has not been vaccinated for E. canis and has not been infected by E. canis.

Table 1 demonstrates the infection and/or vaccination status of animals that can be determined with E. canis DIVA antigens and E. canis vaccine antigens. “Not Done” in Table 1 means that a particular test was not completed and therefore no result is available. For example if a biological sample from an animal is tested with an E. canis DIVA antigen and the result is positive and no test is completed with an E. canis vaccine antigen, then the animal's status would be infected, but vaccination status unknown.

Another aspect of the invention provides a method for determining the presence or absence of an antibody or antigen-binding fragment thereof, in a test sample, wherein the antibody or antigen-binding fragment thereof specifically binds to a purified polypeptide consisting of SEQ ID NOs:10, 22-33 or combinations thereof. The method comprises contacting the test sample with a purified polypeptide comprising SEQ ID NO:10, 22-33 or combinations thereof under conditions suitable for specific binding of the purified polypeptide to the antibody or antigen-binding fragment thereof, and detecting the presence or absence of specific binding. The presence of specific binding indicates the presence of the antibody or antigen-binding fragment thereof, and the absence of specific binding indicates the absence the antibody or antigen-binding fragment thereof.

Vaccines may not be completely effective at preventing or ameliorating infection. Therefore, it is desirable to have a method to determine if a vaccinated animal has become infected despite the vaccination. SEQ ID NOs:10, 22-33 do not detect anti- E. canis antibodies in dogs that have been vaccinated for E. canis and that are not infected with E. canis . SEQ ID NOs:10, 22-33 can be used to detect E. canis infection in dogs that have received or have not received an E. canis vaccine. In one embodiment of the invention, the animal becomes infected with E. canis after receiving an E. canis vaccine and detection of E. canis is still possible.

Another aspect of the invention comprises a composition comprising or consisting of one or more purified polypeptides comprising or consisting of SEQ ID NOs:10, 22-33 or combinations thereof. A polypeptide of the invention can be post-translationally modified. A purified polypeptide is a polypeptide preparation that is substantially free of cellular material, other types of polypeptides, chemical precursors, chemicals used in synthesis of the polypeptide, or combinations thereof. A polypeptide preparation that is substantially free of cellular material, culture medium, chemical precursors, chemicals used in synthesis of the polypeptide, etc., has less than about 30%, 20%, 10%, 5%, 1% or more of other polypeptides, culture medium, chemical precursors, and/or other chemicals used in synthesis. Therefore, a purified polypeptide is about 70%, 80%, 90%, 95%, 99% or more pure. A purified polypeptide does not include unpurified or semi-purified cell extracts or mixtures of polypeptides that are less than 70% pure.

One embodiment of the invention provides a purified polypeptide comprising SEQ ID NOs:22-33, wherein the polypeptide consists of less than about 50, 45, 40, 35, 30, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6 or less (or any range between 50 and 6) contiguous naturally occurring Ehrlichia canis amino acids (i.e, the purified polypeptide does not encompass the entire naturally occurring Ehrlichia canis polypeptide). Naturally occurring Ehrlichia canis amino acids are any polypeptides naturally produced by an Ehrlichia canis organism. In one embodiment of the invention a purified polypeptide comprises SEQ ID NOs:22-33, wherein the polypeptide comprises more than about 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 30, 35, 40, 50, 60, 70, 80, 90, 100, or more contiguous naturally occurring Ehrlichia canis amino acids (or any range between about 6 and 100 amino acids).

The fact that polypeptides SEQ ID NOs:22-33 are smaller than a full length Ehrlichia canis polypeptide is important because smaller polypeptides can have greater specificity and/or sensitivity than full length polypeptides in detection assays. Additionally, these smaller polypeptides can be less expensive to manufacture, and may be obtained at greater purity than the full length polypeptide.

One embodiment of the invention provides a purified polypeptide that is less than about 50, 45, 40, 35, 30, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7 or 6 contiguous naturally Ehrlichia canis amino acids and greater than about 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 30, 35, 40, 50, 60, 70, 80, 90, or 100 contiguous amino acids of SEQ ID NOs:22-33 (or any range between 6 and 100 amino acids). Therefore, a polypeptide of the invention can be, for example, about 15 to about 30; about 15 to about 50; or about 15 to about 100 amino acids in length.

Variant polypeptides are at least about 79%, 80%, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99% or more identical to the polypeptide sequences shown in SEQ ID NOs:22-33 and are also polypeptides of the invention. Variant polypeptides have one or more conservative amino acid variations or other minor modifications and retain biological activity, i.e., are biologically functional equivalents. A biologically active equivalent has substantially equivalent function when compared to the corresponding wild-type polypeptide. In one embodiment of the invention a polypeptide has about 1, 2, 3, 4, 5, 10, 20 or less conservative amino acid substitutions.

These polypeptides may have additional amino acid residues beyond those in SEQ ID NOs:22-33. That is, the polypeptides may have additional amino acids residues added onto the 5′ or 3′ end of the polypeptides, while the sequence identity along 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 40, 45, or 48 contiguous amino acids (depending on the length of the specific SEQ ID NO) of SEQ ID NOs:22-33 is at least about 95%. The additional amino acids added onto the 5′ or 3′ end of the polypeptides are not considered to affect the sequence identity percentage. The additional amino acids can be those that naturally occur or can be non-naturally occurring amino acids. The polypeptides can be, for example, from about 15 to about 50 or about 75 amino acids in length.

Variant polypeptides have one or more conservative amino acid substitutions, deletions additions or other minor modifications and retain biological activity, i.e., are biologically functional equivalents. A biologically active equivalent has substantially equivalent function when compared to the corresponding wild-type polypeptide.

Percent sequence identity has an art recognized meaning and there are a number of methods to measure identity between two polypeptide or polynucleotide sequences. See, e.g., Lesk, Ed., Computational Molecular Biology , Oxford University Press, New York, (1988); Smith, Ed., Biocomputing: Informatics And Genome Projects , Academic Press, New York, (1993); Griffin & Griffin, Eds., Computer Analysis Of Sequence Data, Part I , Humana Press, New Jersey, (1994); von Heinje, Sequence Analysis In Molecular Biology , Academic Press, (1987); and Gribskov & Devereux, Eds., Sequence Analysis Primer , M Stockton Press, New York, (1991). Methods for aligning polynucleotides or polypeptides are codified in computer programs, including the GCG program package (Devereux et al., Nuc. Acids Res. 12:387 (1984)), BLASTP, BLASTN, FASTA (Atschul et al., J. Molec. Biol. 215:403 (1990)), and Bestfit program (Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics Computer Group, University Research Park, 575 Science Drive, Madison, Wis. 53711) which uses the local homology algorithm of Smith and Waterman ( Adv. App. Math., 2:482-489 (1981)). For example, the computer program ALIGN which employs the FASTA algorithm can be used, with an affine gap search with a gap open penalty of −12 and a gap extension penalty of −2.

When using any of the sequence alignment programs to determine whether a particular sequence is, for instance, about 95% identical to a reference sequence, the parameters are set such that the percentage of identity is calculated over the full length of the reference polynucleotide or polypeptide and that gaps in identity of up to 5% of the total number of nucleotides or amino acids in the reference polynucleotide are allowed.

Variant polypeptides can generally be identified by modifying one of the polypeptide sequences of the invention, and evaluating the properties of the modified polypeptide to determine if it is a biological equivalent. A variant is a biological equivalent if it reacts substantially the same as a polypeptide of the invention in an assay such as an immunohistochemical assay, an enzyme-linked immunosorbent Assay (ELISA), a radioimmunoassay (RIA), immunoenzyme assay or a western blot assay, e.g. has 90-110% of the activity of the original polypeptide. In one embodiment, the assay is a competition assay wherein the biologically equivalent polypeptide is capable of reducing binding of the polypeptide of the invention to a corresponding reactive antigen or antibody by about 80, 95, 99, or 100%. An antibody that specifically binds a corresponding wild-type polypeptide also specifically binds the variant polypeptide.

A conservative substitution is one in which an amino acid is substituted for another amino acid that has similar properties, such that one skilled in the art of peptide chemistry would expect the secondary structure and hydropathic nature of the polypeptide to be substantially unchanged. In general, the following groups of amino acids represent conservative changes: (1) ala, pro, gly, glu, asp, gln, asn, ser, thr; (2) cys, ser, tyr, thr; (3) val, ile, leu, met, ala, phe; (4) lys, arg, his; and (5) phe, tyr, trp, his.

A polypeptide of the invention can further comprise a signal (or leader) sequence that co-translationally or post-translationally directs transfer of the protein. The polypeptide can also comprise a linker or other sequence for ease of synthesis, purification or identification of the polypeptide (e.g., poly-His), or to enhance binding of the polypeptide to a solid support. For example, a polypeptide can be conjugated to an immunoglobulin Fc region or bovine serum albumin.

A polypeptide can be covalently or non-covalently linked to an amino acid sequence to which the polypeptide is not normally associated with in nature, i.e., a heterologous amino acid sequence. A heterologous amino acid sequence can be from a non- E. canis organism, a synthetic sequence, or an E. canis sequence not located at the carboxy or amino terminus of a polypeptide of the invention in nature. Additionally, a polypeptide can be covalently or non-covalently linked to compounds or molecules other than amino acids such as indicator reagents. A polypeptide can be covalently or non-covalently linked to an indicator reagent, an amino acid spacer, an amino acid linker, a signal sequence, a stop transfer sequence, a transmembrane domain, a protein purification ligand, or a combination thereof. A polypeptide can also be linked to a moiety (i.e., a functional group that can be a polypeptide or other compound) that enhances an immune response (e.g., cytokines such as IL-2), a moiety that facilitates purification (e.g., affinity tags such as a six-histidine tag, trpE, glutathione, maltose binding protein), or a moiety that facilitates polypeptide stability (e.g., polyethylene glycol; amino terminus protecting groups such as acetyl, propyl, succinyl, benzyl, benzyloxycarbonyl or t-butyloxycarbonyl; carboxyl terminus protecting groups such as amide, methylamide, and ethylamide). In one embodiment of the invention a protein purification ligand can be one or more C amino acid residues at, for example, the amino terminus or carboxy terminus or both termini of a polypeptide of the invention. An amino acid spacer is a sequence of amino acids that are not associated with a polypeptide of the invention in nature. An amino acid spacer can comprise about 1, 5, 10, 20, 100, or 1,000 amino acids.

If desired, a polypeptide of the invention can be part of a fusion protein, which can also contain other amino acid sequences, such as amino acid linkers, amino acid spacers, signal sequences, TMR stop transfer sequences, transmembrane domains, as well as ligands useful in protein purification, such as glutathione-S-transferase, histidine tag, and Staphylococcal protein A, or combinations thereof. More than one polypeptide of the invention can be present in a fusion protein. Fragments of polypeptides of the invention can be present in a fusion protein of the invention. A polypeptide of the invention can be operably linked to non- Ehrlichia canis proteins or non- Ehrlichia canis p16 proteins to form fusion proteins. A fusion protein of the invention can comprise one or more polypeptides shown in SEQ ID NO: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or fragments thereof, or combinations thereof. A fusion protein does not occur in nature. The term “operably linked” means that the polypeptide of the invention and the other polypeptides are fused in-frame to each other either to the N-terminus or C-terminus of the polypeptide of the invention.

Polypeptides of the invention can be in a multimeric form. That is, a polypeptide can comprise one or more copies of SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or a combination thereof. A multimeric polypeptide can be a multiple antigen peptide (MAP). See e.g., Tam, J. Immunol. Methods, 196:17-32 (1996).

Polypeptides of the invention can comprise an antigen that is recognized by an antibody specific for E. canis . The antigen can comprise one or more epitopes (i.e., antigenic determinants). An epitope can be a linear epitope, sequential epitope or a conformational epitope. Epitopes within a polypeptide of the invention can be identified by several methods. See, e.g., U.S. Pat. No. 4,554,101; Jameson & Wolf, CABIOS 4:181-186 (1988). For example, a polypeptide of the invention can be isolated and screened. A series of short peptides, which together span an entire polypeptide sequence, can be prepared by proteolytic cleavage. By starting with, for example, 30-mer polypeptide fragments (or smaller fragments), each fragment can be tested for the presence of epitopes recognized in an ELISA. For example, in an ELISA assay an E. canis polypeptide, such as a 30-mer polypeptide fragment, is attached to a solid support, such as the wells of a plastic multi-well plate. A population of antibodies are labeled, added to the solid support and allowed to bind to the unlabeled antigen, under conditions where non-specific absorption is blocked, and any unbound antibody and other proteins are washed away. Antibody binding is detected by, for example, a reaction that converts a colorless substrate into a colored reaction product. Progressively smaller and overlapping fragments can then be tested from an identified 30-mer to map the epitope of interest.

In one embodiment of the invention, a DIVA antigen comprises an immunodominant epitope or region. That is, an epitope or region that more frequently elicits and binds to antibodies in a population thereof when compared with other epitopes. An antigen can have one or more immunodominant epitopes. Immunodominant epitopes can be mapped on, for example, a polypeptide after the polypeptide has been administered to an animal or prior to such administration. See e.g., U.S. Pat. Publ. 2004/0209324.

A polypeptide of the invention can be produced recombinantly. A polynucleotide encoding a polypeptide of the invention can be introduced into a recombinant expression vector, which can be expressed in a suitable expression host cell system using techniques well known in the art. A variety of bacterial, yeast, plant, mammalian, and insect expression systems are available in the art and any such expression system can be used. Optionally, a polynucleotide encoding a polypeptide can be translated in a cell-free translation system. A polypeptide can also be chemically synthesized or obtained from E. canis cells.

An immunogenic polypeptide of the invention can comprise an amino acid sequence shown in SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or fragments thereof. An immunogenic polypeptide can elicit antibodies or other immune responses (e.g., T-cell responses of the immune system) that recognize epitopes of a polypeptide having SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, or 33. An immunogenic polypeptide of the invention can also be a fragment of a polypeptide that has an amino acid sequence shown in SEQ ID NOs: 2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, or 33. An immunogenic polypeptide fragment of the invention can be about 50, 45, 40, 35, 30, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12, 11, 10, 9, 8, 7, 6 or less (or any range between about 50 and about 6) amino acids in length. An immunogenic polypeptide fragment of the invention can be more than about 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 30, 35, 40, 50, 60, 70, 80, 90, 100, or more amino acids in length (or any range between about 6 and about 100 amino acids).

Antibodies specific for E. canis can be detected in biological fluids or tissues by any method known in the art using the polypeptides of the invention. The simplest methods generally are immunoassay methods. One such method is a competition-based method wherein serum samples are preincubated with an E. canis antigen that is not an element of an E. canis vaccine (e.g., an E. canis DIVA antigen), and then added to a solid phase, such a microtiter plate, having an immobilized monoclonal antibody specific for the E. canis DIVA antigen. Antibodies specific for the E. canis DIVA antigen in the sample will prevent the E. canis DIVA antigen from binding to the immobilized antibody. Detection of any binding of the E. canis DIVA antigen to the immobilized antibody can be determined by adding a second binding partner for the E. canis antigen, either directly labeled or capable of becoming labeled through binding to another binding partner having a label. A positive sample, i.e. a sample having antibodies specific for an E. canis DIVA antigen, is associated with a decrease in signal from the label.

In one particular embodiment, antibodies to an E. canis DIVA antigen in a biological sample can be detected by contacting the sample with an E. canis DIVA antigen and adding the sample to microtiter plate coated with an anti-DIVA antigen monoclonal antibody. Binding of the DIVA antigen to the microtiter plate can be detected by adding a rabbit polyclonal antibody against the DIVA antigen and adding an HRP-conjugated donkey anti-rabbit polyclonal antibody. Antibodies in the sample will prevent the binding of the DIVA antigen to the immobilized antibody, thereby causing a decrease in signal.

Another method for detecting antibodies specific for an E. canis DIVA antigen is a sandwich assay where a biological sample suspected of containing an antibody specific for an E. canis DIVA antigen is contacted with an immobilized E. canis DIVA antigen to form an immunological complex. The presence of an antibody specific for an E. canis DIVA antigen is determined by the detection of the binding of a labeled binding partner for the E. canis antibody, such as a second antibody.

In one aspect of the invention, E. canis DIVA antigens can be immobilized on a suitable solid support. A biological sample is brought into contact with the E. canis DIVA antigen, to which the anti- E. canis antibodies bind, if such antibodies are present in the sample. The binding can be detected by any suitable means, e.g., enzymes, radionuclides, particulates or fluorescent labels. In a suitable embodiment, the detection reagent can be associated with a protein that is the same or similar to that which is used to capture anti- E. canis antibodies (if present). In one particular embodiment, antibodies to E. canis can be detected by immobilizing an E. canis antigen on a solid support. Biological samples can be contacted with the solid support and, following the removal of unbound sample, binding of the E. canis antibodies to the antigen can be accomplished with, for example, a labeled IgG antibody.

DIVA antigens of the invention can also comprise mimitopes of DIVA antigens of the invention. A mimitope is a random peptide epitope that mimics a natural antigenic epitope during epitope presentation. Random peptide epitopes can be identified by generating or selecting a library of random peptide epitopes. The library is contacted with an antibody. Mimitopes are identified that are specifically immunoreactive with the antibody. Random peptide libraries can, for example, be displayed on phage or generated as combinatorial libraries.

E. canis DIVA antigens, e.g., polypeptides, can be natural, i.e., isolated from a natural source, or can be synthetic (i.e., chemically synthesized or recombinantly produced using genetic engineering techniques). Natural proteins can be isolated from the whole bacterium by conventional techniques, such as affinity chromatography. Polyclonal or monoclonal antibodies can be used to prepare a suitable affinity column by well-known techniques.

Proteins that are immunologically cross-reactive with a natural E. canis protein can be chemically synthesized. For example, polypeptides having fewer than about 100 amino acids, more usually fewer than about 80 amino acids, and typically fewer than about 50 amino acids, can be synthesized by the well-known Merrifield solid-phase synthesis method where amino acids are sequentially added to a growing chain. Merrifield, 1963, J. Am. Chem. Soc., 85:2149-2156). Recombinant proteins can also be used. These proteins can be produced by expression in cultured cells of recombinant DNA molecules encoding a desired portion of the E. canis genome. The portion of the E. canis genome can itself be natural or synthetic, with natural genes obtainable from the isolated bacterium by conventional techniques.

E. canis Polynucleotides

Polynucleotides of the invention contain less than an entire microbial genome and can be single- or double-stranded nucleic acids. A polynucleotide can be RNA, DNA, cDNA, genomic DNA, chemically synthesized RNA or DNA or combinations thereof. The polynucleotides can be purified free of other components, such as proteins, lipids and other polynucleotides. For example, the polynucleotide can be 50%, 75%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% purified. A nucleic acid molecule existing among hundreds to millions of other nucleic acid molecules within, for example, cDNA or genomic libraries, or gel slices containing a genomic DNA restriction digest are not to be considered an isolated polynucleotide. The polynucleotides of the invention encode the polypeptides of the invention described above. In one embodiment of the invention the polynucleotides encode polypeptides shown in SEQ ID NOs:2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, fragments thereof, or combinations thereof. Polynucleotides of the invention can consist of less than about 200, 120, 100, 90, 75, 60, 57, 54, 45 (or any range between 200 and 45) contiguous, naturally occurring Ehrlichia canis polynucleotides. Polynucleotides of the invention can consist of greater than about 45, 54, 57, 60, 75, 90, 100, 120, 150, 200, (or any range between 45 and 200), or more contiguous, naturally occurring Ehrlichia canis polynucleotides. The purified polynucleotides can comprise additional heterologous nucleotides (that is, nucleotides that are not from Ehrlichia canis ) and even additional Ehrlichia canis amino acids as long as they do not naturally occur contiguously with Ehrlichia canis p16 polynucleotides or other polynucleotides of the invention. Polynucleotides of the invention can comprise other nucleotide sequences, such as sequences coding for linkers, signal sequences, TMR stop transfer sequences, transmembrane domains, or ligands useful in protein purification such as glutathione-S-transferase, histidine tag, and Staphylococcal protein A.

Polynucleotides of the invention can be isolated. An isolated polynucleotide is a naturally-occurring polynucleotide that is not immediately contiguous with one or both of the 5′ and 3′ flanking genomic sequences that it is naturally associated with. An isolated polynucleotide can be, for example, a recombinant DNA molecule of any length, provided that the nucleic acid sequences naturally found immediately flanking the recombinant DNA molecule in a naturally-occurring genome is removed or absent. Isolated polynucleotides also include non-naturally occurring nucleic acid molecules. A nucleic acid molecule existing among hundreds to millions of other nucleic acid molecules within, for example, cDNA or genomic libraries, or gel slices containing a genomic DNA restriction digest are not to be considered an isolated polynucleotide. The complete nucleotide sequence for E. canis is available from, e.g., GenBank as accession number NCBI: NZ_AAEJ01000001.

Polynucleotides of the invention can also comprise fragments that encode immunogenic polypeptides. Polynucleotides of the invention can encode full-length polypeptides, polypeptide fragments, and variant or fusion polypeptides.

Degenerate nucleotide sequences encoding polypeptides of the invention, as well as homologous nucleotide sequences that are at least about 80, or about 90, 96, 98, or 99% identical to the polynucleotide sequences of the invention and the complements thereof are also polynucleotides of the invention. Percent sequence identity can be calculated as described in the “Polypeptides” section. Degenerate nucleotide sequences are polynucleotides that encode a polypeptide of the invention or fragments thereof, but differ in nucleic acid sequence from the wild-type polynucleotide sequence, due to the degeneracy of the genetic code. Complementary DNA (cDNA) molecules, species homologs, and variants of E. canis polynucleotides that encode biologically functional E. canis polypeptides also are E. canis polynucleotides. Polynucleotides of the invention can be isolated from nucleic acid sequences present in, for example, a biological sample, such as blood, serum, saliva, or tissue from an infected individual. Polynucleotides can also be synthesized in the laboratory, for example, using an automatic synthesizer. An amplification method such as PCR can be used to amplify polynucleotides from either genomic DNA or cDNA encoding the polypeptides.

Polynucleotides of the invention can comprise coding sequences for naturally occurring polypeptides or can encode altered sequences that do not occur in nature. If desired, polynucleotides can be cloned into an expression vector comprising expression control elements, including for example, origins of replication, promoters, enhancers, or other regulatory elements that drive expression of the polynucleotides of the invention in host cells. An expression vector can be, for example, a plasmid, such as pBR322, pUC, or ColE1, or an adenovirus vector, such as an adenovirus Type 2 vector or Type 5 vector. Optionally, other vectors can be used, including but not limited to Sindbis virus, simian virus 40, alphavirus vectors, poxvirus vectors, and cytomegalovirus and retroviral vectors, such as murine sarcoma virus, mouse mammary tumor virus, Moloney murine leukemia virus, and Rous sarcoma virus. Minichromosomes such as MC and MC1, bacteriophages, phagemids, yeast artificial chromosomes, bacterial artificial chromosomes, virus particles, virus-like particles, cosmids (plasmids into which phage lambda cos sites have been inserted) and replicons (genetic elements that are capable of replication under their own control in a cell) can also be used.

Methods for preparing polynucleotides operably linked to an expression control sequence and expressing them in a host cell are well-known in the art. See, e.g., U.S. Pat. No. 4,366,246. A polynucleotide of the invention is operably linked when it is positioned adjacent to or close to one or more expression control elements, which direct transcription and/or translation of the polynucleotide.

Polynucleotides of the invention can be used, for example, as probes or primers, for example PCR primers, to detect the presence of E. canis polynucleotides in a test sample, such as a biological sample. Probes are molecules capable of interacting with a target nucleic acid, typically in a sequence specific manner, for example, through hybridization. Primers are a subset of probes that can support an enzymatic manipulation and that can hybridize with a target nucleic acid such that the enzymatic manipulation occurs. A primer can be made from any combination of nucleotides or nucleotide derivatives or analogs available in the art that do not interfere with the enzymatic manipulation.

A probe or primer can be about 10, 15, 20, 25, 30, 40, 50, 60, 70, 80, 90, 100 or more contiguous nucleotides that encode polypeptides shown in, e.g., SEQ ID NOs:22-33.

The hybridization of nucleic acids is well understood in the art. Typically a probe can be made from any combination of nucleotides or nucleotide derivatives or analogs available in the art. The ability of such probes and primers to specifically hybridize to E. canis polynucleotide sequences will enable them to be of use in detecting the presence of complementary sequences in a given test sample. Polynucleotide probes and primers of the invention can hybridize to complementary sequences in a test sample such as a biological sample, including saliva, sputum, blood, plasma, serum, urine, feces, cerebrospinal fluid, amniotic fluid, wound exudate, or tissue. Polynucleotides from the sample can be, for example, subjected to gel electrophoresis or other size separation techniques or can be immobilized without size separation. The polynucleotide probes or primers can be labeled. Suitable labels, and methods for labeling probes and primers are known in the art, and include, for example, radioactive labels incorporated by nick translation or by kinase, biotin labels, fluorescent labels, chemiluminescent labels, bioluminescent labels, metal chelator labels and enzyme labels. The polynucleotides from the sample are contacted with the probes or primers under hybridization conditions of suitable stringencies.

Depending on the application, varying conditions of hybridization can be used to achieve varying degrees of selectivity of the probe or primer towards the target sequence. For applications requiring high selectivity, relatively stringent conditions can be used, such as low salt and/or high temperature conditions, such as provided by a salt concentration of from about 0.02 M to about 0.15 M salt at temperatures of from about 50° C. to about 70° C. For applications requiring less selectivity, less stringent hybridization conditions can be used. For example, salt conditions from about 0.14 M to about 0.9M salt, at temperatures ranging from about 20° C. to about 55° C. The presence of a hybridized complex comprising the probe or primer and a complementary polynucleotide from the test sample indicates the presence of E. canis or an E. canis polynucleotide in the sample.

Antibodies

Antibodies of the invention are antibody molecules that specifically bind to an E. canis polypeptide of the invention, variant polypeptides of the invention, or fragments thereof. An antibody of the invention can be specific for an Ehrlichia canis polypeptide, for example, an antibody specific for one or more of SEQ ID NOs:10, 22-33. An antibody of the invention can be a polyclonal antibody, a monoclonal antibody, a single chain antibody (scFv), or an antigen-binding fragment of an antibody. Antigen binding fragments of antibodies are the antigen-binding portion of an intact antibody comprising the antigen binding site or variable region of an intact antibody, wherein the portion is free of the constant heavy chain domains of the Fc region of the intact antibody. Examples of antigen binding fragments include Fab, Fab′, Fab′-SH, F(ab′) 2 and F v fragments.

An antibody of the invention can be any antibody class, including for example, IgG, IgM, IgA, IgD and IgE. An antibody or fragment thereof binds to an epitope of a polypeptide of the invention. An antibody can be made in vivo in suitable laboratory animals or in vitro using recombinant DNA techniques. Means for preparing and characterizing antibodies are well know in the art. See, e.g., Dean, Methods Mol. Biol. 80:23-37 (1998); Dean, Methods Mol. Biol. 32:361-79 (1994); Baileg, Methods Mol. Biol. 32:381-88 (1994); Gullick, Methods Mol. Biol. 32:389-99 (1994); Drenckhahn et al. Methods Cell. Biol. 37:7-56 (1993); Morrison, Ann. Rev. Immunol. 10:239-65 (1992); Wright et al. Crit. Rev. Immunol. 12:125-68 (1992). For example, polyclonal antibodies can be produced by administering a polypeptide of the invention to an animal, such as a human or other primate, mouse, rat, rabbit, guinea pig, goat, pig, dog, cow, sheep, donkey, or horse. Serum from the immunized animal is collected and the antibodies are purified from the plasma by, for example, precipitation with ammonium sulfate, followed by chromatography, such as affinity chromatography. Techniques for producing and processing polyclonal antibodies are known in the art.

“Specifically binds” or “specific for” means that a first antigen, e.g., an E. canis polypeptide, recognizes and binds to an antibody of the invention with greater affinity than to other, non-specific molecules. “Specifically binds” or “specific for” also means a first antibody, e.g., an antibody raised against SEQ ID NOs:22-33, recognizes and binds to SEQ ID NOs:22-33, with greater affinity than to other non-specific molecules. A non-specific molecule is an antigen that shares no common epitope with the first antigen. In a preferred embodiment of the invention a non-specific molecule is not derived from Ehrlichia sp., and in particular is not derived from Ehrlichia chaffeensis or Ehrlichia canis. “Ehrlichia sp.” refers to all species of the genus Ehrlichia . For example, an antibody raised against a first antigen (e.g., a polypeptide) to which it binds more efficiently than to a non-specific antigen can be described as specifically binding to the first antigen. In one embodiment, an antibody or antigen-binding portion thereof of the invention specifically binds to a polypeptide of SEQ ID NOs:2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or fragments thereof when it binds with a binding affinity K a of 10 7 l/mol or more. Specific binding can be tested using, for example, an enzyme-linked immunosorbant assay (ELISA), a radioimmunoassay (RIA), or a western blot assay using methodology well known in the art.

Antibodies of the invention include antibodies and antigen binding fragments thereof that (a) compete with a reference antibody for binding to SEQ ID NOs:22-33 or antigen binding fragments thereof, (b) binds to the same epitope of SEQ ID NOs:22-33 or antigen binding fragments thereof as a reference antibody; (c) binds to SEQ ID NOs:22-33 or antigen binding fragments thereof with substantially the same K d as a reference antibody; and/or (d) binds to SEQ ID NOs:22-33 or fragments thereof with substantially the same off rate as a reference antibody, wherein the reference antibody is an antibody or antigen-binding fragment thereof that specifically binds to a polypeptide of SEQ ID NOs:22-33 or antigen binding fragments thereof with a binding affinity K a of 10 7 l/mol or more.

Additionally, monoclonal antibodies directed against epitopes present on a polypeptide of the invention can also be readily produced. For example, normal B cells from a mammal, such as a mouse, which was immunized with a polypeptide of the invention can be fused with, for example, HAT-sensitive mouse myeloma cells to produce hybridomas. Hybridomas producing E. canis -specific antibodies can be identified using RIA or ELISA and isolated by cloning in semi-solid agar or by limiting dilution. Clones producing E. canis -specific antibodies are isolated by another round of screening. Monoclonal antibodies can be screened for specificity using standard techniques, for example, by binding a polypeptide of the invention to a microtiter plate and measuring binding of the monoclonal antibody by an ELISA assay. Techniques for producing and processing monoclonal antibodies are known in the art. See e.g., Kohler & Milstein, Nature, 256:495 (1975). Particular isotypes of a monoclonal antibody can be prepared directly, by selecting from the initial fusion, or prepared secondarily, from a parental hybridoma secreting a monoclonal antibody of a different isotype by using a sib selection technique to isolate class-switch variants. See Steplewski et al., P.N.A.S. U.S.A. 82:8653 1985; Spria et al., J. Immunolog. Meth. 74:307, 1984. Monoclonal antibodies of the invention can also be recombinant monoclonal antibodies. See, e.g., U.S. Pat. No. 4,474,893; U.S. Pat. No. 4,816,567. Antibodies of the invention can also be chemically constructed. See, e.g., U.S. Pat. No. 4,676,980.

Antibodies of the invention can be chimeric (see, e.g., U.S. Pat. No. 5,482,856), humanized (see, e.g., Jones et al., Nature 321:522 (1986); Reichmann et al., Nature 332:323 (1988); Presta, Curr. Op. Struct. Biol. 2:593 (1992)), or human antibodies. Human antibodies can be made by, for example, direct immortilization, phage display, transgenic mice, or a Trimera methodology, see e.g., Reisener et al., Trends Biotechnol. 16:242-246 (1998).

Antibodies that specifically bind E. canis antigens (e.g., E. canis polypeptides shown in SEQ ID NO:2, 4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33), are particularly useful for detecting the presence of E. canis or E. canis antigens in a sample, such as a serum, blood, plasma, fecal, cell, tissue, urine or saliva sample from an E. canis -infected animal such as a human or dog. An immunoassay for E. canis or an E. canis antigen can utilize one antibody or several antibodies. An immunoassay for E. canis or an E. canis antigen can use, for example, a monoclonal antibody specific for an E. canis epitope, a combination of monoclonal antibodies specific for epitopes of one E. canis polypeptide, monoclonal antibodies specific for epitopes of different E. canis polypeptides, polyclonal antibodies specific for the same E. canis antigen, polyclonal antibodies specific for different E. canis antigens, or a combination of monoclonal and polyclonal antibodies. Immunoassay protocols can be based upon, for example, competition, direct reaction, or sandwich type assays using, for example, labeled antibody. Antibodies of the invention can be labeled with any type of label known in the art, including, for example, fluorescent, chemiluminescent, radioactive, enzyme, colloidal metal, radioisotope and bioluminescent labels.

Antibodies of the invention or antigen-binding fragments thereof can be bound to a support and used to detect the presence of E. canis or an E. canis antigen, e.g., an E. canis DIVA antigen or E. canis vaccine antigen. Supports include, for example, glass, polystyrene, polypropylene, polyethylene, dextran, nylon, amylases, natural and modified celluloses, polyacrylamides, agaroses and magletite.

Antibodies of the invention can further be used to isolate E. canis organisms or E. canis antigens by immunoaffinity columns. The antibodies can be affixed to a solid support by, for example, adsorption or by covalent linkage so that the antibodies retain their immunoselective activity. Optionally, spacer groups can be included so that the antigen binding site of the antibody remains accessible. The immobilized antibodies can then be used to bind E. canis organisms or E. canis antigens from a sample, such as a biological sample including saliva, serum, sputum, blood, urine, feces, cerebrospinal fluid, amniotic fluid, wound exudate, or tissue. The bound E. canis organisms or E. canis antigens are recovered from the column matrix by, for example, a change in pH.

Antibodies of the invention can also be used in immunolocalization studies to analyze the presence and distribution of a polypeptide of the invention during various cellular events or physiological conditions. Antibodies can also be used to identify molecules involved in passive immunization and to identify molecules involved in the biosynthesis of non-protein antigens. Identification of such molecules can be useful in vaccine development. Antibodies of the invention, including, for example, monoclonal antibodies and single chain antibodies, can be used to monitor the course of amelioration of a disease caused by E. canis . By measuring the increase or decrease of E. canis antibodies specific for E. canis antigens in a test sample from an animal, it can be determined whether a particular therapeutic regiment aimed at ameliorating the disorder is effective. Antibodies can be detected and/or quantified using for example, direct binding assays such as RIA, ELISA, or western blot assays.

Detection

The methods of the invention can be used to detect antibodies or antigen-binding antibody fragments specific for Ehrlichia canis antigens or Ehrlichia canis polynucleotides in a test sample, such as a biological sample, an environmental sample, or a laboratory sample. A test sample can potentially comprise Ehrlichia sp. polynucleotides, Ehrlichia canis polynucleotides, Ehrlichia sp. polypeptides, Ehrlichia canis polypeptides, antibodies specific for Ehrlichia sp., and/or antibodies specific for Ehrlichia canis , unrelated polynucleotide and polypeptides, combinations thereof, or none of the above. A biological sample can include, for example, sera, blood, cells, plasma, saliva, urine, feces, or tissue from a mammal such as a horse, cat, dog or human. The test sample can be untreated, precipitated, fractionated, separated, diluted, concentrated, or purified.

In one embodiment methods of the invention comprise contacting one or more polypeptides of the invention with a test sample under conditions that allow polypeptide/antibody complexes, i.e., immunocomplexes, to form. That is, polypeptides of the invention specifically bind to antibodies specific for Ehrlichia canis antigens located in the sample. In one embodiment of the invention one or more polypeptides of the invention specifically bind to antibodies that are specific for Ehrlichia canis antigens and do not specifically bind to antigens from other pathogens, such as, e.g., Ehrlichia chaffeensis antigens. One of skill in the art is familiar with assays and conditions that are used to detect antibody/polypeptide complex binding. The formation of a complex between polypeptides and antibodies in the sample is detected. The formation of antibody/polypeptide complexes is an indication that Ehrlichia canis polypeptides are present in the sample. The lack of detection of the polypeptide/antibody complexes is an indication that Ehrlichia canis polypeptides are not present in the sample.

Antibodies of the invention can be used in a method of detection of Ehrlichia canis antigens by obtaining a test sample from, e.g., a human or animal suspected of having an Ehrlichia canis infection. The test sample is contacted with antibodies of the invention under conditions enabling the formation of antibody-antigen complexes (i.e., immunocomplexes). One of skill in the art is aware of conditions that enable and are appropriate for formation of antigen/antibody complexes. The amount of antibody-antigen complexes can be determined by methodology known in the art. A level that is higher than that formed in a negative control sample indicates presence of Ehrlichia canis antigens. A negative control sample is a sample that does not comprise any Ehrlichia canis polypeptides. In one embodiment of the invention the negative control contains no Ehrlichia sp. polypeptides. In one embodiment of the invention an antibody is specific for Ehrlichia canis antigens and is not specific for antigens from other pathogens, such as, e.g., Ehrlichia chaffeensis antigens. Alternatively, a polypeptide of the invention can be contacted with a test sample. Antibodies specific for Ehrlichia canis in a positive test sample will form antigen-antibody complexes under suitable conditions. The amount of antibody-antigen complexes can be determined by methods known in the art.

In one embodiment of the invention, Ehrlichia canis infection can be detected in a subject. A biological sample is obtained from the subject. One or more purified polypeptides comprising SEQ ID NOs:22-33 or other polypeptides of the invention are contacted with the biological sample under conditions that allow polypeptide/antibody complexes to form. The polypeptide/antibody complexes are detected. The detection of the polypeptide/antibody complexes is an indication that antibodies specific for Ehrlichia canis are present. The lack of detection of the polypeptide/antibody complexes is an indication that the mammal does not have antibodies specific for Ehrlichia canis.

In one embodiment of the invention the Ehrlichia canis antibodies detected by an immunoassay of the invention are IgG, IgM, IgA, IgD or IgE. In another embodiment of the invention, the antibodies used to detect Ehrlichia canis antigens are IgG, IgM, IgA, IgD or IgE.

In one embodiment of the invention, Ehrlichia canis infection can be detected in a subject by about 5 days, 6 days, 7 days, 8 days, 9 days, 10 days, 11 days, 12 days, 13 days, 14 days, 15 days, 16 days, 17 days, 18 days, 19 days, 20 days, 21 days or more after the subject acquired the Ehrlichia canis infection. In one embodiment of the invention, Ehrlichia canis infection can be detected in a subject by about 21 days, 20 days, 19 days, 18 days, 17 days, 16 days, 15 days, 14 days, 13 days, 12 days, 11 days, 10 days, 9 days, 8 days, 7 days, 6 days, 5 days, or less after the subject acquired the Ehrlichia canis infection.

In one embodiment of the invention, the polypeptide/antibody complex is detected when an indicator reagent, such as an enzyme conjugate, which is bound to the antibody, catalyzes a detectable reaction. Optionally, an indicator reagent comprising a signal generating compound can be applied to the polypeptide/antibody complex under conditions that allow formation of a polypeptide/antibody/indicator complex. The polypeptide/antibody/indicator complex is detected. Optionally, the polypeptide or antibody can be labeled with an indicator reagent prior to the formation of a polypeptide/antibody complex. The method can optionally comprise a positive or negative control.

In one embodiment of the invention, one or more antibodies of the invention are attached to a solid phase or substrate. A test sample potentially comprising a protein comprising a polypeptide of the invention is added to the substrate. One or more antibodies that specifically bind polypeptides of the invention are added. The antibodies can be the same antibodies used on the solid phase or can be from a different source or species and can be linked to an indicator reagent, such as an enzyme conjugate. Wash steps can be performed prior to each addition. A chromophore or enzyme substrate is added and color is allowed to develop. The color reaction is stopped and the color can be quantified using, for example, a spectrophotometer.

In another embodiment of the invention, one or more antibodies of the invention are attached to a solid phase or substrate. A test sample potentially comprising a protein comprising a polypeptide of the invention is added to the substrate. Second anti-species antibodies that specifically bind polypeptides of the invention are added. These second antibodies are from a different species than the solid phase antibodies. Third anti-species antibodies are added that specifically bind the second antibodies and that do not specifically bind the solid phase antibodies are added. The third antibodies can comprise an indicator reagent such as an enzyme conjugate. Wash steps can be performed prior to each addition. A chromophore or enzyme substrate is added and color is allowed to develop. The color reaction is stopped and the color can be quantified using, for example, a spectrophotometer.

Assays of the invention include, but are not limited to those based on competition, direct reaction or sandwich-type assays, including, but not limited to enzyme linked immunosorbent assay (ELISA), western blot, IFA, radioimmunoassay (RIA), hemagglutination (HA), fluorescence polarization immunoassay (FPIA), and microtiter plate assays (any assay done in one or more wells of a microtiter plate). One assay of the invention comprises a reversible flow chromatographic binding assay, for example a SNAP® assay (reversible flow chromatographic assay). See e.g., U.S. Pat. No. 5,726,010.

Assays can use solid phases or substrates or can be performed by immunoprecipitation or any other methods that do not utilize solid phases. Where a solid phase or substrate is used, one or more polypeptides of the invention are directly or indirectly attached to a solid support or a substrate such as a microtiter well, magnetic bead, non-magnetic bead, column, matrix, membrane, fibrous mat composed of synthetic or natural fibers (e.g., glass or cellulose-based materials or thermoplastic polymers, such as, polyethylene, polypropylene, or polyester), sintered structure composed of particulate materials (e.g., glass or various thermoplastic polymers), or cast membrane film composed of nitrocellulose, nylon, polysulfone or the like (generally synthetic in nature). In one embodiment of the invention a substrate is sintered, fine particles of polyethylene, commonly known as porous polyethylene, for example, 10-15 micron porous polyethylene from Chromex Corporation (Albuquerque, N. Mex.). All of these substrate materials can be used in suitable shapes, such as films, sheets, or plates, or they may be coated onto or bonded or laminated to appropriate inert carriers, such as paper, glass, plastic films, or fabrics. Suitable methods for immobilizing peptides on solid phases include ionic, hydrophobic, covalent interactions and the like. Immobilization of one or more analyte capture reagents, e.g., E. canis polypeptides, onto a device or solid support is performed so that an analyte capture reagent will not be washed away by the sample, diluent and/or wash procedures. One or more analyte capture reagents can be attached to a surface by physical adsorption (i.e., without the use of chemical linkers) or by chemical binding (i.e., with the use of chemical linkers). Chemical binding can generate stronger attachment of capture reagents on a surface and provide defined orientation and conformation of the surface-bound molecules.

In one type of assay format, one or more polypeptides can be coated on a solid phase or substrate. A test sample suspected of containing anti- Ehrlichia canis antibodies or antigen-binding fragments thereof is incubated with an indicator reagent comprising a signal generating compound conjugated to an antibodies or antibody fragments specific for Ehrlichia canis for a time and under conditions sufficient to form antigen/antibody complexes of either antibodies of the test sample to the polypeptides of the solid phase or the indicator reagent compound conjugated to an antibody specific for Ehrlichia canis to the polypeptides of the solid phase. The reduction in binding of the indicator reagent conjugated to anti- Ehrlichia canis antibodies to the solid phase can be quantitatively measured. A measurable reduction in the signal compared to the signal generated from, e.g., a confirmed negative Ehrlichia canis test sample indicates the presence of anti-Ehrlichia canis antibodies in the test sample. This type of assay can quantitate the amount of anti-Ehrlichia canis antibodies in a test sample.

In another type of assay format, one or more polypeptides of the invention are coated onto a support or substrate. A polypeptide of the invention is conjugated to an indicator reagent and added to a test sample. This mixture is applied to the support or substrate. If antibodies specific for Ehrlichia canis are present in the test sample they will bind the one or more polypeptides conjugated to an indicator reagent and to the one or more polypeptides immobilized on the support. The polypeptide/antibody/indicator complex can then be detected. This type of assay can quantitate the amount of anti- Ehrlichia canis antibodies in a test sample.

In another type of assay format, one or more polypeptides of the invention are coated onto a support or substrate. The test sample is applied to the support or substrate and incubated. Unbound components from the sample are washed away by washing the solid support with a wash solution. If Ehrlichia canis specific antibodies are present in the test sample, they will bind to the polypeptide coated on the solid phase. This polypeptide/antibody complex can be detected using a second species-specific antibody that is conjugated to an indicator reagent. The polypeptide/antibody/anti-species antibody indicator complex can then be detected. This type of assay can quantitate the amount of anti- Ehrlichia canis antibodies in a test sample.

Another embodiment of the invention provides a device that is suitable for a lateral flow assay. For example, a test sample is added to a flow matrix at a first region (a sample application zone). The test sample is carried in a fluid flow path by capillary action to a second region of the flow matrix where a label capable of binding and forming a first complex with an analyte in the test sample. The first complex is carried to a third region of the flow matrix where an E. canis polypeptide is immobilized at a distinct location. A second complex is formed between an immobilized polypeptide and the first complex including the antibody from the sample. For example, a first complex comprising a gold sol particle and an E. canis polypeptide bound to an E. canis antibody will specifically bind and form a second complex with a second immobilized E. canis polypeptide or with a second antibody directed to E. canis antibodies. The label that is part of the second complex can be directly visualized.

In another aspect, the invention includes one or more labeled specific binding reagents that can be mixed with a test sample prior to application to a device of the invention. In this case it is not necessary to have labeled specific binding reagents deposited and dried on a specific binding reagent pad in the device. A labeled specific binding reagent, whether added to a test sample or pre-deposited on the device, can be for example, a labeled antibody that specifically binds an antibody for E. canis.

An E. canis DIVA antigen or an E. canis vaccine antigen, e.g., a polypeptide, can be an immobilized analyte capture reagent in a reaction zone (solid phase). A second analyte capture reagent, e.g. an anti-IgG or anti-IgM antibody, that has been conjugated to a label, can either be added to the sample before the sample is added to the device, or the second analyte capture reagent can be incorporated into the device. For example the labeled specific binding reagent can be deposited and dried on a fluid flow path that provides fluid communication between the sample application zone and the solid phase. Contact of the labeled specific binding reagent with the fluid sample results in dissolution of the labeled specific binding reagent.

The device can also include a liquid reagent that transports unbound material (e.g., unreacted fluid sample and unbound specific binding reagents) away from the reaction zone (solid phase). A liquid reagent can be a wash reagent and serve only to remove unbound material from the reaction zone, or it can include a detector reagent and serve to both remove unbound material and facilitate analyte detection. For example, in the case of a specific binding reagent conjugated to an enzyme, the detector reagent includes a substrate that produces a detectable signal upon reaction with the enzyme-antibody conjugate at the reactive zone. In the case of a labeled specific binding reagent conjugated to a radioactive, fluorescent, or light-absorbing molecule, the detector reagent acts merely as a wash solution facilitating detection of complex formation at the reactive zone by washing away unbound labeled reagent.

Two or more liquid reagents can be present in a device, for example, a device can comprise a liquid reagent that acts as a wash reagent and a liquid reagent that acts as a detector reagent and facilitates analyte detection.

A liquid reagent can further include a limited quantity of an “inhibitor”, i.e., a substance that blocks the development of the detectable end product. A limited quantity is an amount of inhibitor sufficient to block end product development until most or all excess, unbound material is transported away from the second region, at which time detectable end product is produced.

The formation of a polypeptide/antibody complex or a polypeptide/antibody/indicator complex can be detected by, for example, radiometric, calorimetric, fluorometric, size-separation, or precipitation methods. Optionally, detection of a polypeptide/antibody complex is by the addition of a secondary antibody that is coupled to an indicator reagent comprising a signal generating compound. Indicator reagents comprising signal generating compounds (labels) associated with a polypeptide/antibody complex can be detected using the methods described above and include chromogenic agents, catalysts such as enzyme conjugates fluorescent compounds such as fluorescein and rhodamine, chemiluminescent compounds such as dioxetanes, acridiniums, phenanthridiniums, ruthenium, and luminol, radioactive elements, direct visual labels, as well as cofactors, inhibitors, magnetic particles, and the like. Examples of enzyme conjugates include alkaline phosphatase, horseradish peroxidase, beta-galactosidase, and the like. The selection of a particular label is not critical, but it will be capable of producing a signal either by itself or in conjunction with one or more additional substances.

Formation of the complex is indicative of the presence of anti- Ehrlichia canis antibodies in a test sample. Therefore, the methods of the invention can be used to diagnose Ehrlichia canis infection in an animal.

The methods of the invention can also indicate the amount or quantity of anti-Ehrlichia canis antibodies in a test sample. With many indicator reagents, such as enzyme conjugates, the amount of antibody present is proportional to the signal generated. Depending upon the type of test sample, it can be diluted with a suitable buffer reagent, concentrated, or contacted with a solid phase without any manipulation. For example, it usually is preferred to test serum or plasma samples that previously have been diluted, or concentrated specimens such as urine, in order to determine the presence and/or amount of antibody present.

The invention further comprises assay kits (e.g., articles of manufacture) for detecting anti- Ehrlichia canis antibodies or antigen-binding antibody fragments, or Ehrlichia canis polypeptides in a sample. A kit comprises one or more polypeptides of the invention and means for determining binding of the polypeptide to anti- Ehrlichia canis antibodies or antibody fragments in the sample. A kit or article of manufacture can also comprise one or more antibodies or antibody fragments of the invention and means for determining binding of the antibodies or antibody fragments to Ehrlichia canis polypeptides in the sample. A kit can comprise a device containing one or more polypeptides or antibodies of the invention and instructions for use of the one or more polypeptides or antibodies for, e.g., the identification of an Ehrlichia canis infection in a mammal. The kit can also comprise packaging material comprising a label that indicates that the one or more polypeptides or antibodies of the kit can be used for the identification of Ehrlichia canis infection. Other components such as buffers, stabilizers, positive controls, negative controls, detector reagents, and the like, known to those of ordinary skill in art, can be included in such test kits. The polypeptides, antibodies, assays, and kits of the invention are useful, for example, in the diagnosis of individual cases of Ehrlichia canis infection in a patient, as well as epidemiological studies of Ehrlichia canis outbreaks. The relative amounts of the various reagents can be varied, to provide for concentrations in solution of the reagents that substantially optimize the sensitivity of the assay. Particularly, the reagents can be provided as dry powders, usually lyophilized, which on dissolution will provide for a reagent solution having the appropriate concentrations for combining with a sample.

Polypeptides and assays of the invention can be combined with other polypeptides or assays to detect the presence of Ehrlichia canis along with other organisms. For example, polypeptides and assays of the invention can be combined with reagents that detect heartworm and/or Borrelia burgdorferi and/or Ehrlichia chaffeensis and/or Anaplasma platys and/or Anaplasma phagocytophilum.

Polynucleotides of the invention can be used to detect the presence of Ehrlichia canis polynucleotides in a sample. The polynucleotides can be used to detect Ehrlichia canis polynucleotides in a sample by a simple hybridization reaction and can also be used in, e.g., polymerase chain reactions (PCR) such as a real-time PCR reaction. Methods and compositions of the invention can also be used to differentially detect the presence Ehrlichia canis from other Ehrlichia sp., such as Ehrlichia chaffeensis.

PCR assays are well described in the art, including, for example, U.S. Pat. Nos. 4,683,195; U.S. Pat. No. 4,683,202;U.S. Pat. No. 4,965,188. Generally, polynucleotide primers are annealed to denatured strands of a target nucleic acid. Primer extension products are formed by polymerization of deoxynucleoside triphosphates by a polymerase. PCR then involves repetitive cycles of template nucleic acid denaturation, primer annealing and extension of the annealed primers by the action of a thermostable polymerase. The process results in exponential amplification of the target Ehrlichia canis nucleic acids in the test sample, which allows for the detection of target polynucleotides existing in very low concentrations in a sample.

Real-time PCR assays are based on the detection of a signal, e.g., a fluorescent reporter signal. This signal increases in direct proportion to the amount of PCR product in a reaction. Real-time PCR is any amplification technique that makes it possible to monitor the evolution of an ongoing amplification reaction. See, Quantitation of DNA/RNA Using Real-Time PCR Detection, Perkin Elmer Applied Biosystems (1999); PCR Protocols (Academic Press New York, 1989). By recording the amount of fluorescence emission at each cycle, it is possible to monitor the PCR reaction during exponential phase where the first significant increase in the amount of PCR product correlates to the initial amount of target template. The higher the starting copy number of the nucleic acid target, the sooner a significant increase in fluorescence is observed.

One embodiment of the invention provides a method for detecting and/or quantifying Ehrlichia canis polynucleotides in a test sample. Sense primers and antisense primers can be added to a test sample under conditions suitable for a polymerase chain reaction. The primers hybridize with Ehrlichia canis polynucleotides such that an amplification product is formed if Ehrlichia canis polynucleotides are present in the test sample. Amplification products are detected and the presence and/or quantity of Ehrlichia canis polynucleotides are determined. Amplification products can be detected with a polynucleotide probe that hybridizes, under conditions suitable for a polymerase chain reaction, with an Ehrlichia canis polynucleotide sequence. The amplification product can be quantified by measuring a detection signal from the probe and comparing said detection signal to a second probe detection signal from a quantification standard. The quantification standard can be extracted in parallel with the test sample.

Methods of Treatment, Amelioration, or Prevention of a Disease Caused by E. canis

In one embodiment of the invention, a DIVA polypeptide, polynucleotide or antibody of the invention could be used to treat, ameliorate, or prevent a disease caused by E. canis . If, however, a DIVA polypeptide is used to treat, ameliorate, or prevent a disease caused by E. canis , it could not, thereafter, be used as a DIVA polypeptide for the detection and differentiation of infected, non-vaccinated, and vaccinated animals because a vaccinated animal's immune system could recognize the DIVA antigen used for vaccination. However, a DIVA polypeptide that does not cross-react with antibodies to the DIVA polypeptide used for treatment, amelioration or prevention of a disease caused by E. canis may still be used as an E. canis DIVA antigen.

For example, if SEQ ID NO:2 or a fragment thereof is used as a vaccine, then SEQ ID NOs:4, 6, 8, 10, 12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or combinations thereof can be used as a DIVA polypeptide, if they do not cross-react with antibodies specific for SEQ ID NO:2. Presently, none of SEQ ID NOs:10, 22-33 are used in a commercial subunit E. canis vaccine and SEQ ID NOs:10, 22-33 do not detect E. canis -specific antibodies in animals vaccinated with whole inactivated E. canis cells. Therefore, DIVA polypeptide selection is not presently an issue. However, those of skill in the art are aware of the composition of E. canis vaccines. If a commercial E. canis subunit vaccine were to comprise SEQ ID NOs: 10, 22-33, then one of skill in the art would avoid use of SEQ ID NOs:10, 22-33 (if necessary due to the generation of E. canis antibodies specific for SEQ ID NOs:10, 22-33) to differentiate vaccination status and would instead use other E. canis DIVA antigens.

Therefore, the DIVA polypeptides, polynucleotides, and antibodies could be used in two different ways: (1) as compositions for the prevention, treatment, or amelioration of a disease or infection caused by E. canis ; and (2) as an E. canis DIVA antigen for the detection and differentiation of animals that are vaccinated; non-vaccinated; infected or not infected with E. canis.

Polypeptides, polynucleotides, and antibodies of the invention can be used to treat, ameliorate, or prevent a disease caused by E. canis . For example, an antibody, such as a monoclonal antibody of the invention or fragments thereof, can be administered to an animal, such as a human. In one embodiment of the invention an antibody or fragment thereof is administered to an animal in a pharmaceutical composition comprising a pharmaceutically acceptable carrier. A pharmaceutical composition comprises a therapeutically effective amount of an antibody or fragments thereof. A therapeutically effective amount is an amount effective in alleviating the symptoms of E. canis infection or in reducing the amount of E. canis organisms in a subject.

Polypeptides or polynucleotides of the invention can be present in an immunogenic composition and used to elicit an immune response in a host. An immunogenic composition is capable of inducing an immune response in an animal. An immunogenic polypeptide or polynucleotide composition of the invention is particularly useful in sensitizing an immune system of an animal such that, as one result, an immune response is produced that ameliorates or prevents the effect of E. canis infection. The elicitation of an immune response in animal model can be useful to determine, for example, optimal doses or administration routes. Elicitation of an immune response can also be used to treat, prevent, or ameliorate a disease or infection caused by E. canis . An immune response includes humoral immune responses or cell mediated immune responses, or a combination thereof. An immune response can also comprise the promotion of a generalized host response, e.g., by promoting the production of defensins.

The generation of an antibody titer by an animal against E. canis can be important in protection from infection and clearance of infection. Detection and/or quantification of antibody titers after delivery of a polypeptide or polynucleotide can be used to identify epitopes that are particularly effective at eliciting antibody titers. Epitopes responsible for a strong antibody response to E. canis can be identified by eliciting antibodies directed against E. canis polypeptides of different lengths. Antibodies elicited by a particular polypeptide epitope can then be tested using, for example, an ELISA assay to determine which polypeptides contain epitopes that are most effective at generating a strong response. Polypeptides or fusion proteins that contain these epitopes or polynucleotides encoding the epitopes can then be constructed and used to elicit a strong antibody response.

A polypeptide, polynucleotide, or antibody of the invention can be administered to a mammal, such as a mouse, rabbit, guinea pig, macaque, baboon, chimpanzee, human, cow, sheep, pig, horse, dog, cat, or to animals such as chickens or ducks, to elicit antibodies in vivo. Injection of a polynucleotide has the practical advantages of simplicity of construction and modification. Further, injection of a polynucleotide results in the synthesis of a polypeptide in the host. Thus, the polypeptide is presented to the host immune system with native post-translational modifications, structure, and conformation. A polynucleotide can be delivered to a subject as “naked DNA.”

Administration of a polynucleotide, polypeptide, or antibody can be by any means known in the art, including intramuscular, intravenous, intrapulmonary, intramuscular, intradermal, intraperitoneal, or subcutaneous injection, aerosol, intranasal, infusion pump, suppository, mucosal, topical, and oral, including injection using a biological ballistic gun (“gene gun”). A polynucleotide, polypeptide, or antibody can be accompanied by a protein carrier for oral administration. A combination of administration methods can also be used to elicit an immune response. Antibodies can be administered at a daily dose of about 0.5 mg to about 200 mg. In one embodiment of the invention antibodies are administered at a daily dose of about 20 to about 100 mg.

Pharmaceutically acceptable carriers and diluents for therapeutic use are well known in the art and are described in, for example, Remington's Pharmaceutical Sciences, Mack Publishing Co. (A. R. Gennaro ed. (1985)). The carrier should not itself induce the production of antibodies harmful to the host. Such carriers include, but are not limited to, large, slowly metabolized, macromolecules, such as proteins, polysaccharides such as latex functionalized SEPHAROSE®, agarose, cellulose, cellulose beads and the like, polylactic acids, polyglycolic acids, polymeric amino acids such as polyglutamic acid, polylysine, and the like, amino acid copolymers, peptoids, lipitoids, and inactive, avirulent virus particles or bacterial cells. Liposomes, hydrogels, cyclodextrins, biodegradable nanocapsules, and bioadhesives can also be used as a carrier for a composition of the invention.

Pharmaceutically acceptable salts can also be used in compositions of the invention, for example, mineral salts such as hydrochlorides, hydrobromides, phosphates, or sulfates, as well as salts of organic acids such as acetates, proprionates, malonates, or benzoates. Especially useful protein substrates are serum albumins, keyhole limpet hemocyanin, immunoglobulin molecules, thyroglobulin, ovalbumin, tetanus toxoid, and other proteins well known to those of skill in the art. Compositions of the invention can also contain liquids or excipients, such as water, saline, phosphate buffered saline, Ringer's solution, Hank's solution, glucose, glycerol, dextrose, malodextrin, ethanol, or the like, singly or in combination, as well as substances such as wetting agents, emulsifying agents, tonicity adjusting agents, detergent, or pH buffering agents. Additional active agents, such as bacteriocidal agents can also be used.

If desired, co-stimulatory molecules, which improve immunogen presentation to lymphocytes, such as B7-1 or B7-2, or cytokines such as MIP1α, GM-CSF, IL-2, and IL-12, can be included in a composition of the invention. Optionally, adjuvants can also be included in a composition. Adjuvants are substances that can be used to nonspecifically augment a specific immune response. Generally, an adjuvant and a polypeptide of the invention are mixed prior to presentation to the immune system, or presented separately, but are presented into the same site of the animal. Adjuvants can include, for example, oil adjuvants (e.g. Freund's complete and incomplete adjuvants) mineral salts (e.g. Alk(SO 4 ) 2 ; AlNa(SO 4 ) 2 , AlNH 4 (SO 4 ), Silica, Alum, Al(OH) 3 , and Ca 3 (PO 4 ) 2 ), polynucleotides (i.e. Polyic and Poly AU acids), and certain natural substances (e.g. wax D from Mycobacterium tuberculosis , as well as substances found in Corynebacterium parvum, Bordetella pertussis and members of the genus Brucella . Adjuvants which can be used include, but are not limited to MF59-0, aluminum hydroxide, N-acetyl-muramyl-L-threonyl-D-isoglutamine (thr-MDP), N-acetyl-nor-muramyl-L-alanyl-D-isoglutamine (CGP 11637), referred to as nor-MDP), N-acetylmuramyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1′-2′-dipalmitoyl-sn-glycero-3-hydroxyphosphoryloxy)-ethylamine (CGP 19835A, referred to as MTP-PE), and RIBI, which contains three components extracted from bacteria, monophosphoryl lipid A, trehalose dimycolate and cell wall skeleton (MPL+TDM+CWS) in a 2% squalene/TWEEN® 80 emulsion.

The compositions of the invention can be formulated into ingestible tablets, buccal tablets, troches, capsules, elixirs, suspensions, syrups, wafers, injectable formulations, mouthwashes, dentrifices, and the like. The percentage of one or more polypeptides, polynucleotides, or antibodies of the invention in such compositions and preparations can vary from 0.1% to 60% of the weight of the unit.

Administration of polypeptides, polynucleotides, or antibodies can elicit an immune response in the animal that lasts for at least 1 week, 1 month, 3 months, 6 months, 1 year, or longer. Optionally, an immune response can be maintained in an animal by providing one or more booster injections of the polypeptide, polynucleotide, or antibodies at 1 month, 3 months, 6 months, 1 year, or more after the primary injection. If desired, co-stimulatory molecules or adjuvants can also be provided before, after, or together with the compositions.

A composition of the invention comprising a polypeptide, polynucleotide, antibody, or a combination thereof is administered in a manner compatible with the particular composition used and in an amount that is effective to elicit an immune response as detected by, for example, an ELISA. A polynucleotide can be injected intramuscularly to a mammal, such as a baboon, chimpanzee, dog, or human, at a dose of 1 ng/kg, 10 ng/kg, 100 ng/kg, 1000 ng/kg, 0.001 mg/kg, 0.1 mg/kg, or 0.5 mg/kg. A polypeptide or antibody can be injected intramuscularly to a mammal at a dose of 0.01, 0.05, 0.5, 0.75, 1.0, 1.5, 2.0, 2.5, 5 or 10 mg/kg.

Polypeptides, polynucleotides, or antibodies, or a combination thereof can be administered either to an animal that is not infected with E. canis or can be administered to an E. canis -infected animal. The particular dosages of polynucleotide, polypeptides, or antibodies in a composition will depend on many factors including, but not limited to the species, age, gender, concurrent medication, general condition of the mammal to which the composition is administered, and the mode of administration of the composition. An effective amount of the composition of the invention can be readily determined using only routine experimentation.

A method of monitoring an E. canis infection in a patient is also provided. The method includes determining the level of anti- E. canis antibodies in a sample of a biological fluid from a patient suffering from or at risk of an E. canis infection at a first time point using polypeptides of the invention. The level of anti- E. canis antibodies is determined in one or more samples of the biological fluid from the patient at one or more different time points. The levels of anti- E. canis antibodies are determined at different time points such that the E. canis infection is monitored. The level or amount of anti- E. canis antibodies provide an indication of the success of treatment or therapy, or of progression of the infection.

All patents, patent applications, and other scientific or technical writings referred to anywhere herein are incorporated by reference in their entirety. The invention illustratively described herein suitably can be practiced in the absence of any element or elements, limitation or limitations that are not specifically disclosed herein. Thus, for example, in each instance herein any of the terms “comprising”, “consisting essentially of”, and “consisting of” can be replaced with either of the other two terms, while retaining their ordinary meanings. The terms and expressions which have been employed are used as terms of description and not of limitation, and there is no intention that in the use of such terms and expressions of excluding any equivalents of the features shown and described or portions thereof, but it is recognized that various modifications are possible within the scope of the invention claimed. Thus, it should be understood that although the present invention has been specifically disclosed by embodiments, optional features, modification and variation of the concepts herein disclosed may be resorted to by those skilled in the art, and that such modifications and variations are considered to be within the scope of this invention as defined by the description and the appended claims.

In addition, where features or aspects of the invention are described in terms of Markush groups or other grouping of alternatives, those skilled in the art will recognize that the invention is also thereby described in terms of any individual member or subgroup of members of the Markush group or other group.

1 ATGGATATTG ATAACAATAA TGTGACTACA TCAAGTACGC AAGATAAAAG TGGGAATTTA

61 ATGGAAGTGA TTATGCGTAT ATTAAATTTT GGTAATAATT CAGATGAGAA AGTAAGCAAT

121 GAAGACACTA AAGTTCTTGT AGAGAGTTTA CAACCTGCTG TGAATGACAA TGTAGGAAAT

181 CCATCAAGTG AAGTTGGTAA AGAAGAAAAT GCTCCTGAAG TTAAAGCGGA AGATTTGCAA

241 CCTGCTGTAG ATGGTAGTGT AGAACATTCA TCAAGTGAAG TTGGGAAAAA AGTATCTGAA

301 ACTAGTAAAG AGGAAAGTAC TCCTGAAGTT AAAGCAGAAG ATTTGCAACC TGCTGTAGAT

361 GGTAGTATAG AACATTCATC AAGTGAAGTT GGAGAAAAAG TATCTAAAAC TAGTAAAGAG

421 GAAAGTACTC CTGAAGTTAA AGCAGAAGAT TTGCAACCTG CTGTAGATGA TAGTGTGGAA

481 CATTCATCAA GTGAAGTTGG AGAAAAAGTA TCTGAAACTA GTAAAGAGGA AAATACTCCT

541 GAAGTTAAAG CAGAAGATTT GCAACCTGCT GTAGATGGTA GTATAGAACA TTCATCAAGT

601 GAAGTTGGAG AAAAAGTATC TAAAACTAGT AAAGAGGAAA GTACTCCTGA AGTTAAAGCA

661 GAAGATTTGC AACCTGCTGT AGATGATAGT GTGGAACATT CATCAAGTGA AGTTGGAGAA

721 AAAGTATCTG AAACTAGTAA AGAGGAAAAT ACTCCTGAAG TTAAAGCAGA AGATTTGCAA

781 CCTGCTGTAG ATGGTAGTGT GGAACATTCA TCAAGTGAAG TTGGAGAAAA AGTATCTAAA

841 ACTAGTAAAG AGGAAAGTAC TCCTGAAGTT AAAGCAGAAG ATTTGCAACC TGCTGTAGAT

901 GATAGTGTGG AACATTCATC AAGTGAAGTT GGAGAAAAAG TATCTGAAAC TAGTAAAGAG

961 GAAAATACTC CTGAAGTTAG AGCAGAAGAT TTGCAACCTG CTGTAGATGG TAGTGTAGAA

1021 CATTCATCAA GTGAAGTTGG AGAAAAAGTA TCTGAAACTA GTAAAGAGGA AAGTACTCCT

1081 GAAGTTAAAG CAGAAGATTT GCAACCTGCT GTAGATAGTA GTATAGAACA TTCATCAAGT

1141 GAAGTTGGGA AAAAAGTATC TGAAACTAGT AAAGAGGAAA GTACTCCTGA AGTTAAAGCA

1201 GAAGATTTGC AACCTGCTGT AGATGGTAGT GTAGAACATT CATCAAGTGA AGTTGGAGAA

1261 AAAGTATCTG AAACTAGTAA AGAGGAAAAT ACTCCTGAAG TTAAAGCAGA AGATTTGCAA

1321 CCTGCTGTAG ATGGTAGTGT AGAACATTCA TCAAGTGAAG TTGGAGAAAA AGTATCTGAA

1381 ACTAGTAAAG AGGAAAATAC TCCTGAAGTT AAAGCGGAAG ATTTGCAACC TGCTGTAGAT

1441 GGTAGTGTAG AACATTCATC AAGTGAAGTT GGAGAAAAAG TATCTGAAAC TAGTAAAGAA

1501 GAAAGTACTC CTGAAGTTAA AGCAGAAGAT TTGCAACCTG CTGTAGATGA TAGTGTAGAA

1561 CATTCATCAA GTGAAGTTGG AGAAAAAGTA TCTGAAACTA GTAAAGAAGA AAGTACTCCT

1621 GAAGTTAAAG CGGAAGATTT GCAACCTGCT GTAGATGGTA GTGTGGAACA TTCATCAAGT

1681 GAAGTTGGAG AAAAAGTATC TGAGACTAGT AAAGAGGAAA GTACTCCTGA AGTTAAAGCG

1741 GAAGTACAGC CTGTTGCAGA TGGTAATCCT GTTCCTTTAA ATCCTATGCC TTCAATTGAT

1801 AATATTGATA CTAATATAAT ATTCCATTAC CATAAAGACT GTAAAAAAGG TTCAGCTGTA

1861 GGAACAGATG AAATGTGTTG TCCTGTATCA GAATTAATGG CTGGGGAACA TGTTCATATG

1921 TATGGAATTT ATGTCTATAG AGTTCAATCA GTAAAGGATT TAAGTGGTGT ATTTAATATA

1981 GATCATTCTA CATGTGATTG TAATTTAGAT GTTTATTTTG TAGGATACAA TTCTTTTACT

2041 AACAAAGAAA CAGTTGATTT AATATAA

SEQ ID NO: 2 120kDa Antigen Protein Sequence

1 MDIDNNNVTT SSTQDKSGNL MEVIMRILNF GNNSDEKVSN EDTKVLVESL QPAVNDNVGN

61 PSSEVGKEEN APEVKAEDLQ PAVDGSVEHS SSEVGKKVSE TSKEESTPEV KAEDLQPAVD

121 GSIEHSSSEV GEKVSKTSKE ESTPEVKAED LQPAVDDSVE HSSSEVGEKV SETSKEENTP

181 EVKAEDLQPA VDGSIEHSSS EVGEKVSKTS KEESTPEVKA EDLQPAVDDS VEHSSSEVGE

241 KVSETSKEEN TPEVKAEDLQ PAVDGSVEHS SSEVGEKVSK TSKEESTPEV KAEDLQPAVD

301 DSVEHSSSEV GEKVSETSKE ENTPEVRAED LQPAVDGSVE HSSSEVGEKV SETSKEESTP

361 EVKAEDLQPA VDSSIEHSSS EVGKKVSETS KEESTPEVKA EDLQPAVDGS VEHSSSEVGE

421 KVSETSKEEN TPEVKAEDLQ PAVDGSVEHS SSEVGEKVSE TSKEENTPEV KAEDLQPAVD

481 GSVEHSSSEV GEKVSETSKE ESTPEVKAED LQPAVDDSVE HSSSEVGEKV SETSKEESTP

541 EVKAEDLQPA VDGSVEHSSS EVGEKVSETS KEESTPEVKA EVQPVADGNP VELNEMESID

601 NIDTNIIFHY HKDCKKGSAV GTDEMCCPVS ELMAGEHVHM YGIYVYRVQS VKDLSGVFNI

661 DHSTCDCNLD VYFVGYNSFT NKETVDLI.

SEQ ID NO 3 200kDa Antigen nucleotide sequence from 1081 to end

1  AATTTAGAT TTTGGACTTG TAGATGGAGA TGGTAAAAAT CCTTTACATC ATGCTGTTGA

61 ACATTTGCCA CCTGTTATAC TTAAGGGCGT AATGGACCAT GTAAAAAATA GTAGTGAGTT

121 TCAAGATTTA GTAAATGATC CTGATTATTT TGGAAATACT ATAGCTCATT ATGCAGTTAA

181 GAATAAAAAT GCTGATTTAA CATTGTTTAA CATGCTGAAA GCTTCAGGAG CTGATTTAAA

241 TGTTAGGAAT GTAGTTGGTC GAGCTCCAAT ACATGTTGCT TCTTCTAATG GTAAGGCTAA

301 TGCAGTTTCT GGACTTGTAT CATGTGGTAT TGACGTTAAT TCTCAAGATG TGAATGGAGA

361 TACACCACTT CATATTGCTG TTGAAGGCGG TAGTATGGAG ACGGTATTAG CAGTGTTAAA

421 TCAGAGAGGT GCTGATGTTA GTGTCCAGAA TAACGATGGA GTTACACCTA TGCTTAGTGC

481 TGCTAAATAT GGAGATATAG GTGTAATAAA AGCTTTAGGT TCAGCTAAAC CAAATATTAA

541 AGGTGAAGAC ACTGTTGCTA AATCATTGCT GATGGAGGAT TACAAAGGTT TTACACCCTT

601 GCATTTTGTA GCTGGTGGTG GTAGCAGAGA TACATTCCGT GTCGTAAGAA AAAATTATGA

661 AAAATGTCAT GACTTAGCTA CTATTAGGGC AGCTTTAATG CAAGATAGAA GTGGTGGTGA

721 GCTTGTAAAT TTAGGGGATT TTGAAAGTGA AAATATATTG GGTTCGCCAA ATGCAAAATT

781 CTTGCAGCAT ATTCAATCAG CAAATTTTGG TTTTTCTCCA GCGCATTGTG CTATAGTATC

841 GTCTAATCAC AATGTAATGA AAGATATCTT AAATTTTGTT GGGGATTCGT TACACCTACC

901 AAGTGAGCGT GGGTATAATG CAATGCAGGT TGCTGCTTTG TTTGGTGACA AAGAAGCAGT

961 GAAAATGCTT GCTAAAAGTG CTAAGCCAAG TGATCTTAAT TTTAAGACTT CAGCAACTCC

1021 TACTCCGTTA AATCTTGCAT GTCTTAGAGG TGATAATGAG GTAGTACGTG GGTTAGTAGG

1081 TCAACATGGT ATTGACATTA ACCAACGTAT GGGAAGTGAT AAAAACACTG TATTGCATTA

1141 TGCAATCAGC AAAGGAGATA GTTTTCTTGT GCAAAAGATA TTAGCTCATA CTGGAGTTGA

1201 TGTTAATTGT GAGAATAACC TAGGTCAAAC GCCTTTACAT TTAGCAGTTG AGGGAGGAGA

1261 TCCTAAGATA GTATCTTCTC TTCTTAAAGC TGGTGCAGTA GTTAATCGTC TGGATGATAA

1321 TGGTAGATCT GTACTTTCTT CTGCGATAGT TCCAGGTAGA AAAGAAAAGG GAGTGCTGGG

1381 TATAGTTAAT AAATTGCTGG ATAGAGGTGC AGATATTAAT TTAGATGGAG ACCACAATAT

1441 ACTTTTTGAT CAGTGTCTAA GGGGTGGATA TAATAATGTA TTAGATAAGT TAATACAACA

1501 AGGGGTTGAA GTTAATCGAA ATAGTGAAAT ACGTCCAATG GTTTATGCTG CAATATCTGG

1561 TAATGAGCAT GCTATCAAAT CATTAGCTAA TGCTGGTGGA GATGTTAATG AAGTAGTAAA

1621 TAATCCATCT AGTAGGCATT CAGGAAATCC TTTAATTATG GTTGCAGTAG CAGATGGTAA

1681 TGCAGGTCTT CTTAAAACAT TAGTTTCTGA AGGATGTGAT GTTGGTAAAT CTGGAAAAGA

1741 TGGTAATACA GCGTTACATT ATGCTGTTAG TCATTCAGAT AAAGAGTTTG GTAATAAAGC

1801 TATAAAGATA TTAATTTCAC GTAATAGTGT TGGGACTAAT AGAGATATTC TTACTCAAAA

1861 GAATAACGCA GGTGATACAC CTTTACATGA AGCTCTTAAG TCAGGTAATA TTAATTCTGT

1921 ACAGAATATC TTAAGTGCTG TACATCCAAG ATACGCAAAG GAGATATTAA CAGCCAGAGA

1981 CAAAGAAGGG TACACACCAA TGCATTATAC TGTTGGAGTA AATAATGTTG ATGTTGGTAG

2041 AAGTATTCTA GAGTCTATGC TCTCTAAAGG TGTGAATAAT CTTGGAGAGA TTGTTGGAGC

2101 ACAGGATAGT AATTTTCGAA CACCTCTGCA TGCTGCTATT AAAATATCTG ATTATCGTGC

2161 TGCGGACATG ATAATAGGTA GCTTATCGAA AACAGAATTG TCAAAGTTAT CGCAATTAAC

2221 AGATATTAAC GGGGATACAC CACTACATCT TTCTTGTCAG TCTGGTAATG TCGAGATGAC

2281 ACAATTCTTT CTTGGAGGTT TGGATAAACG TGAATTACCT AAGACATTAA AGATAGCAAA

2341 TAAAAATGGA GATACTCCTT TACATGATGC TATAAGAAAT GATGATATTA AATCTGCAAA

2401 AATGATGATT AGGAATTGTA ACAAAGAAGA ACTTGCTAAT GTATTAAAAT GTAAAGATAG

2461 TTTTGGTAAT ACAGTATTGC ATACTATTGC TGACCAAGTT ATTGCGAATC CAGAATCAAA

2521 GAAAGACCTT GATGGTTTGA TGAATTTAGC AGTGAAAAGG CTAAAGAATC AAGATCTGAA

2581 AGATCTAGTT AATACGCGAA ATAACTCTGA CGATACTGTT GCACATTGTG CTCTTTTATC

2641 GGATATGAAA TATGCTCAAA AGATACTTAA ATCATGTAAC CATGATACAT TAGTGAGAGG

2701 AAATAGTAAT AATCAATCTT TATCAGAGTG TATTCGTGAT GATAGTAAAT ATAAAAAAGG

2761 TGGAATTTTT AGTAAGTCTT TATTTTCAAA ATTAAAGAAA CTTGAGGCAC GAGCTGCCAG

2821 CGCTAGTTAT GAAGAATTAT CTAGTATCAG TAGTGGTAGT GATGTTTCTT CTGTATCAAC

2881 AAATAGCACA GAAGTAAGTG CAGTACCTGA AGTGGCAAGA AGTAGTGGTG CTGTGTCGTT

2941 CAAACATGTG CAAGAAACAG GAGTTGACAC GTCTGGTCCT TCTGATATAG AAAGTTTAGA

3001 GAGATTATCT GATACTAGTC TTGGGTCAAA TGATTTTGAT CAGCGAATGG CAGATTTAGA

3061 TCAAGAAATA GCAAATATTG TTAGTGGTTT ACCAGAAGTT ACCCAGGTAG CTGTAAGTCA

3121 ACAACAAGCA GCATCTCCTA GTTCAGGTCA AGCTGCTGGT GTGCAACAAA AAGAGATGCA

3181 GAGATAA

SEQ ID NO: 4 200kDa Antigen Partial Protein Sequence

1 NLDFGLVDGD GKNPLHHAVE HLPPVILKGV MDHVKNSSEF QDLVNDPDYF GNTIAHYAVK

61 NKNADLTLFN MLKASGADLN VRNVVGRAPI HVASSNGKAN AVSGLVSCGI DVNSQDVNGD

121 TPLHIAVEGG SMETVLAVLN QRGADVSVQN NDGVTPMLSA AKYGDIGVIK ALGSAKPNIK

181 GEDTVAKSLL MEDYKGFTPL HFVAGGGSRD TFRVVRKNYE KCHDLATIRA ALMQDRSGGE

241 LVNLGDFESE NILGSPNAKF LQHIQSANFG FSPAHCAIVS SNHNVMKDIL NFVGDSLHLP

301 SERGYNAMQV AALFGDKEAV KMLAKSAKPS DLNFKTSATP TPLNLACLRG DNEVVRGLVG

361 QHGIDINQRM GSDKNTVLHY AISKGDSFLV QKILAHTGVD VNCENNLGQT PLHLAVEGGD

421 PKIVSSLLKA GAVVNRLDDN GRSVLSSAIV PGRKEKGVLG IVNKLLDRGA DINLDGDHNI

481 LFDQCLRGGY NNVLDKLIQQ GVEVNRNSEI RPMVYAAISG NEHAIKSLAN AGGDVNEVVN

541 NPSSRHSGNP LIMVAVADGN AGLLKTLVSE GCDVGKSGKD GNTALHYAVS HSDKEFGNKA

601 IKILISRNSV GTNRDILTQK NNAGDTPLHE ALKSGNINSV QNILSAVHPR YAKEILTARD

661 KEGYTPMHYT VGVNNVDVGR SILESMLSKG VNNLGEIVGA QDSNFRTPLH AAIKISDYRA

721 ADMIIGSLSK TELSKLSQLT DINGDTPLHL SCQSGNVEMT QFFLGGLDKR ELPKTLKIAN

781 KNGDTPLHDA IRNDDIKSAK MMIRNCNKEE LANVLKCKDS FGNTVLHTIA DQVIANPESK

841 KDLDGLMNLA VKRLKNQDLK DLVNTRNNSD DTVAHCALLS DMKYAQKILK SCNHDTLVRG

901 NSNNQSLSEC IRDDSKYKKG GIFSKSLFSK LKKLEARAAS ASYEELSSIS SGSDVSSVST

961 NSTEVSAVPE VARSSGAVSF KHVQETGVDT SGPSDIESLE RLSDTSLGSN DFDQRMADLD

1021 QEIANIVSGL PEVTQVAVSQ QQAASPSSGQ AAGVQQKEMQ R.

SEQ ID NO: 5 ATPase - Clone 84 Fragment Nucleotide Sequence

1 AATTATGCTG AAACTACTTT ATCATTTGGT GAATCTCGAG CAGAAGGACG TGAATCTCCA

61 TCAAGTGCAT TTGTTCAAAC TGGTCAATCA GAAGTACCTC GGAGTGAGGC TGCAGAGCCA

121 TTAATTCAAT TTCCTCATGA TGAAGAAAGT ACTGCATTAG GTTCTCAAGC AACTATGACA

181 GGAGTGTCTA CTCAGGCTAG TCCGTCAGCA GCATATCAGG ATGATAGTGA AATATCACGT

241 ATGAGGTCTA TGGCAGGAAC ATCTGCTCAA GCTGATCAAT CAGCAGTACA TCGTCGGAGT

301 GGTACAGCAT TAGAGCCATT AATTGAATTG CCTGATGAAG AAGAAAATGC TGCATTAGAT

361 TTTCAAACAG CTATGACAGG AGTGCCTACT CAGGCTAGTC CGTCAGCAGT ACATCGGAGT

421 GGTGTTGCAT CAGATCCTAC GCTACCTGAT GATGAAAGAA TTGATGTTCC ATCAGTTTCA

481 TCTCAAGTTG TAAGACCTTT TAGTGATGGT GAAGATTATT CAGTATATGA TAAATCAGGT

541 GTAGTAAGTG GTCATGAAAG ACCTGTTTCT TCTAGAGATT CAAGACAATT GGATGCATTT

601 GGTGATCCAT CAGATGATTT ATTGCCGGAG AGTGAAATTA TTGTTAGCAG CAGTAAGAAA

661 GCAATATTAG ATAGCCAAAA TGAAATAGAA TCTCTTATTC AGAGTGGAGA TACTTCTAGA

721 TGTATTAGGG CAATTAATAG TGCTCCTAGT GCGTCAGTGT TTCAACTGAA GACTTTATCG

781 AATGATATAT CTATTGCTGG ACGTGCTTTT TTAAATGGTA ATATTGATTT AATAGAAGCT

841 TGTATGAATT CTGGCAAGAA ATTAAATCCA AATATTACTG ATAATGAAAA AAATACTCTA

901 TTACATCAAT TTGTAGGATA TTTTGAACGC GATCCGAGAA TGTTGCTTGA TGCAGGAATG

961 CGTAATCTGT TTTTGAGATT ATGCATGGAT TATGGTTTCG ATATTAATCA TAAAAATAGT

1021 AATGGTAATA CAGTACTTGA TAGATTAAAT GATTTAGTAG AAGGGTTAAG TAGTTCGCAA

1081 GTTGATCTTG AAAGTAGTGG TATTGATGAG TTTATGATCT CATTGTTAGC TCATTCTAGA

1141 ATGAGTGATC AAGCAGTAAA GAATATTGCT ACTGCGCAAA ATGAGTTTTT TGCACGTGAT

1201 TCTGTTTATA ATATTAGTCG TTTAGTTGAT ACTTCTATAG TTTTGCAGAA TAAATTCAGT

1261 GAAGTATTTT ATGAAGTCTG TGGACGTATT TTATCTGAAG AAGCTGGTAA ACATAAGGGT

1321 GTTGCTGAAG CAAATTATTC AAGATTGAAT AAAATATTAA ATGATGAATG TCTTAGAAAG

1381 ACTTTAGCTA ATACAGATGC CGATGGAAAT AATGTTTTAC AGAGATTGTG TCAAGATATT

1441 GCTTCTGGAA AAATCAATGC TCGTGATGAC AGAGTATTAA AACTTTTTGA GACAATTATA

1501 TCTAATTTAA AAGACAAAGA TAAAGCATTA CTAGAGGATT TATTATTTAA TAATAGAAAC

1561 TCAAGATTTG AAAATTGCAT TGAAGCTATA CCACGTATTC CTGGTGCCGA TGCTCTATTT

1621 AAAAAACTAG AAGAGTTATT ATTAAAAAAG AAAATAGCAG AGTCTTGTGA TTTTAATTCT

1681 ATGTTAGTGA ATTGTGCTGA GTCTGCTAAT GATAATTTAT ATAATTACCT GCGCACTAAT

1741 TATGCAGTTA TTGGTATAAA TAACGTAGAT ATAAATGGCA ATTCATCCCT ATGTAAAGCT

1801 GTTGTTACTG GGTCACAAGG TATTGTTAAA GCAGTATTAT CAACTGGAAC TAATATTAAT

1861 AGGAAAGATA AAAATGGTAA TACACCTTTA CATGCATTGT TAATTTTTAT GATGTCTAAC

1921 CCTGAACTTG TCAAGGAGCA ACATATTTCA CTTGTGAAAT TCTTAGCGTC TCGTGGAGCT

1981 TTACTTAATG TAAAAAATAA TATGAATATT TCTCCAATTA TGCTTGCAGA ATCTATTGAT

2041 AAGAAAGAGG AACTTGCTAA GAAATTTACA AATCAAAAAG TTAGTATTTT AGAATCTTTA

2101 ATAGCTGGTA GTGAAGAACA TTTAGGGCTT AAATCCAAAT GTATATCTGA GTTAAAGCCT

2161 TATATAGAAT TAGGAAAAGG CATGAAGTAC GAAGATATAC ATGCTGATGT AATAGGTGGT

2221 GTATTATCTG CTGATATGTG TAATGCTAGA TTGCAGATAG GTAAATTATT AAATGGTGAT

2281 TTTTGTAAAG AAAATGAATT AAAGACAGTA AAATTTAATT TTTCTGATAC AAATAAGGGT

2341 TATGTACAAA ATGTTGGTAA AAAAAGAAAT TAT

SEQ ID NO: 6 ATPase - Clone 84 Fragment Protein Sequence

1 NYAETTLSFG ESRAEGRESP SSAFVQTGQS EVPRSEAAEP LIQFPHDEES TALGSQATMT

61 GVSTQASPSA AYQDDSEISR MRSMAGTSAQ ADQSAVHRRS GTALEPLIEL PDEEENAALD

121 FQTAMTGVPT QASPSAVHRS GVASDPTLPD DERIDVPSVS SQVVRPFSDG EDYSVYDKSG

181 VVSGHERPVS SRDSRQLDAF GDPSDDLLPE SEIIVSSSKK AILDSQNEIE SLIQSGDTSR

241 CIRAINSAPS ASVFQLKTLS NDISIAGRAF LNGNIDLIEA CMNSGKKLNP NITDNEKNTL

301 LHQFVGYFER DPRMLLDAGM RNLFLRLCMD YGFDINHKNS NGNTVLDRLN DLVEGLSSSQ

361 VDLESSGIDE FMISLLAHSR MSDQAVKNIA TAQNEFFARD SVYNISRLVD TSIVLQNKFS

421 EVFYEVCGRI LSEEAGKHKG VAEANYSRLN KILNDECLRK TLANTDADGN NVLQRLCQDI

481 ASGKINARDD RVLKLFETII SNLKDKDKAL LEDLLFNNRN SRFENCIEAI PRIPGADALF

541 KKLEELLLKK KIAESCDFNS MLVNCAESAN DNLYNYLRTN YAVIGINNVD INGNSSLCKA

601 VVTGSQGIVK AVLSTGTNIN RKDKNGNTPL HALLIFMMSN PELVKEQHIS LVKFLASRGA

661 LLNVKNNMNI SPIMLAESID KKEELAKKFT NQKVSILESL IAGSEEHLGL KSKCISELKP

721 YIELGKGMKY EDIHADVIGG VLSADMCNAR LQIGKLLNGD FCKENELKTV KFNFSDTNKG

781 YVQNVGKKRN Y

SEQ ID NO: 7 ATPase - Clone 7 Fragment Nucleotide Sequence

1 GTAAAAAAAT TAAGATTATT ATTAAATTCA ATAAGTGAGT TACCGCAAGA ATTAAAAGAT

61 CAAATTTTAA GTACTAGAAG TACTATAGAT AAATTACGAA ATAGAATTAA TGCCTGCATA

121 AAGTCTGACG ATAGAGAAGG TATTGCACAT GCTGTAGAAT CTATGGCTAG TTCTTATTGT

181 GAATTATTAG GACATTGTAG ATTAATTTTT AAGAAATTAT ATGATGAAAA TGCTGATAAA

241 AGTTTGCTAG AATTATGTAT TAAAGAATAT CAATCTGATT TAAACAAATT ATTGGAACAA

301 GGTATTGATA TATGTGCTTC AGAAGTCTCA TCAGAATGTA AGGATTTAGT TTGTAAAGTA

361 TGTGAAGATG AATTTGAGAA ATATGACTCT TTATCTAAAG TACAAAGATT CAGGGAATTA

421 TCTGGTGAAA TTGCTGATTT GGATGATAAA TTAACAAGAA GGGCTTCTTT TGTTGAGACT

481 TTTGGATTAT TTAGCAGTAG ATTAAGACAT TATAGGGAAA TTTTAGGAGA TGGTGATTTA

541 AAATTTCGAG AGAGGATAGT TGAAAAATAT CAAGAGGATT TAAAGGAATT ATTAGAATTA

601 TCTGTTGATC TTCATTTGTT AATAAATTTA CCAGCATTAG AAGATTTACG CGATCATAGA

661 AATTTAGTGC ATAGAGCATG TAATGCTGAA ATTGAAAAAT ATCTAACTTT ATTTGATGAT

721 CAACAATTAC GTACATTATC GCAAGAAGTG AATAATGCTC ATGGTGAATT GATACAGATG

781 TTTTCTAAGT TTAGTATATT TGTTGATGGC GTTACTGGTA TTGAACAGAG CACATCTCAA

841 GTAGAGCACC CTCGTTCTGA TATTGCTAAA AGAGATACTA CAACACCAAA GCAACGTGTT

901 GTGCAAGGTA AAGATGATAT ACAATCTAGT GATAGTGATA GTGATAGTGA TAGTAAATAC

961 GGTGATGATG ATAGTAAAAA AGCATCAGTT AGTGCACCTG CTGTTGACCA AGTTGTACCT

1021 GTAGCTGATG TTCAACCTGA ACCTCAGCTA GGTGAAGGAT TGGAAACATT AGAGTCTAGT

1081 ATAGCTGAAG GACCTGAGTT GCCTGGTGAT GCATCTACTG CTAAGCAATC TATACCTTTT

1141 GCGATAACAC CATCAAGTCC TGAGACAGTT GATGAAAAAC TTGAAAGTTC TGGTGTTAGT

1201 CAAGATGGTA TTACAACACC AGGACAACGT GTTGTGCAAG GTAAAGATGA TATACAATCT

1261 AGTGATAGTG ATAGTGATAG TAAATACGGT GATGATGATA GTAAAAAAGC ATCAGCTAGT

1321 GCACCTGCTG TTGACCAAGT TGTACCTGTA GCTGATGTTC AACCTGAACC TCAGCTAGGT

1381 GAAAAATTGG AAACATTAGA GTCTAGTATA ACTAAAGGAC CTGAGTTGCC TGGTGATGCA

1441 TCTACTGCTA AGCAATCTAT ACCTTTTGCG ATAACACCAT CAAGTCCTGA GACAGTTGAT

1501 GAAAAACTTG AAAGTTCTGG TGTTAGTCAA GATGGTATTA CAACACCAGG ACAACGTGTT

1561 GTGCAAGGTA AAGATGATAT ACAATCTAGT GATAGTGATA GTGATAGTAA ATACGGTGAT

1621 GATGATAGTA AAAAAGCATC AGCTAGTGCA CCTGCTGTTG ACCAAGTTGT ACCTTCTGAC

1681 ACTCGTGCAG ATGGAGTATC AGAACCATTA GCATCTCATG TGGATCAAGG ATCTGATGTA

1741 CCTGGTGATG CATCTGTTGA TGGTGTTGAT TTAAGATTAG GACGGTTATC TACTGAGCAA

1801 AGTGGATTGT TGCCACGTCA TGAACAAAAT GTAAGAGCAT TTATTTTAGA ACAGAGTTTG

1861 TTAGATCAAT TATATATGGA CTATATAGAT TTACACCCTG ATCAGAAAAG TTGTGAAGCT

1921 TATAATTCAG CATTGCATGG ATATAATACA AGATTAGAGT TACAGAAGGA ATATAACAGG

1981 ATTTTTGAAT CACATGAATC AGCATCTCCA AATGAAATTA ATAGTTTTTC ACAAAAATAT

2041 AGAGCAGCAT TAAGAGATGT TGCGCAGGAT ATTGTTAATC AGGGTCCAAT GTTTTATTCT

2101 TCTAGAGATG CAATGCTATT AAGGGCTAGA GTAGACACAT TGTGTGATAT GTGTCGTTCA

2161 ATACGTAATC TGTATATGGT TGAATTAGAT GCCATAGATA AAGAAGAAAA ATCGTTACAA

2221 TCTGATATGA AATCTGCAAG TTCTAGTGAT AAAAAGTTGA TACAAGAAAA AATAAAATTA

2281 CTT

SEQ ID NO:8 ATPase - Clone 7 Fragment Protein Sequence

1 VKKLRLLLNS ISELPQELKD QILSTRSTID KLRNRINACI KSDDREGIAH AVESMASSYC

61 ELLGHCRLIF KKLYDENADK SLLELCIKEY QSDLNKLLEQ GIDICASEVS SECKDLVCKV

121 CEDEFEKYDS LSKVQRFREL SGEIADLDDK LTRRASFVET FGLFSSRLRH YREILGDGDL

181 KFRERIVEKY QEDLKELLEL SVDLHLLINL PALEDLRDHR NLVHRACNAE IEKYLTLFDD

241 QQLRTLSQEV NNAHGELIQM FSKFSIFVDG VTGIEQSTSQ VEHPRSDIAK RDTTTPKQRV

301 VQGKDDIQSS DSDSDSDSKY GDDDSKKASV SAPAVDQVVP VADVQPEPQL GEGLETLESS

361 IAEGPELPGD ASTAKQSIPF AITPSSPETV DEKLESSGVS QDGITTPGQR VVQGKDDIQS

421 SDSDSDSKYG DDDSKKASAS APAVDQVVPV ADVQPEPQLG EKLETLESSI TKGPELPGDA

481 STAKQSIPFA ITPSSPETVD EKLESSGVSQ DGITTPGQRV VQGKDDIQSS DSDSDSKYGD

541 DDSKKASASA PAVDQVVPSD TRADGVSEPL ASHVDQGSDV PGDASVDGVD LRLGRLSTEQ

601 SGLLPRHEQN VRAFILEQSL LDQLYMDYID LHPDQKSCEA YNSALHGYNT RLELQKEYNR

661 IFESHESASP NEINSFSQKY RAALRDVAQD IVNQGPMFYS SRDAMLLRAR VDTLCDMCRS

721 IRNLYMVELD AIDKEEKSLQ SDMKSASSSD KKLIQEKIKL L

SEQ ID NO: 9: p16 Antigen Nucleotide Sequence

1 ATGTTACACG TTCAAAATCA TGTTGATCAA CATACAAATC ATATAGAACA TGATGATTAC

61 CATTTTACTG GTCCTACTAG TTTTGAAGTT AATCTTTCTG AAGAAGAAAA AATGGAGTTA

121 CAAGAAGTAT CTTCTATTGA TAGTGTAGGA TGCGAAGATT GTGATCCAAA TTGTCGTTAT

181 CCTTTAGAAT TAGTAGAATG TCAGCGTATT GAGGAAAGAC CAGTATGCAA TGCAGGTTTA

241 GAGAGCTTGA CTGTTGATGC ATATCAATTA GGATTGTTGT TAGGTGGTTT TTTAAGTGCT

301 ATGAATTACA TATCTTATAG CTATCCTTGT TATTATTATG ATTGTTGTGA TAGAAATTAT

361 TACGACTGTT GTCATAAGAA TGCGTGTTAT TACAACTGTT GTGATTGTGC GTAA

SEQ ID NO: 10 p16 Antigen Protein Sequence

1 MLHVQNHVDQ HTNHIEHDDY HFTGPTSFEV NLSEEEKMEL QEVSSIDSVG CEDCDPNCRY

61 PLELVECQRT EERPVCNAGL ESLTVDAYQL GLLLGGFLSA MNYTSYSYPC YYYDCCDRNY

121 YDCCHKNACY YNCCDCA.

SEQ ID NO: 11 Ribosomal Protein L1 Nucleotide Sequence

1 ATGACGATTT TCTTAGAAAG TGATGATGAT AAGAGTAACT TTAAGAAGAC ATTGGAGAAC

61 GGTACTAAAG ACAAGACAAA TCTAGATAAT ACTTATTATG ACTATCATCA TGAAGATGAT

121 ATGGGAAATA CTGAATATCA TTATGTGAGT TTGGATAGAG TGGATCATGT TAAGATGCCT

181 GAAGAGCCTG TAGGTTATGG TGGAGATACT TTACCTATTG TTCCTACTAC AGCTGCTAGT

241 GTATCTGGTA GTGATGCAGG CGTTGCTGTA GGTAATGTTA AAGATTTTGA AGATAATGTT

301 TTTCATCATA CATCTACTAT AAGAAACGAT GAATTGAAGA TAGATTTACG AATACATACT

361 TTAAAGGATT TATCTGATAA AAGATTACGT GAAATTGAAA AGGGATTTAA TGATACGGTA

421 ACAAAATTTA AAAATAATTT TGGGTTAGAA CCAAATGATG GAGAAACTAT TTTTGATTTA

481 TACCTTTTTG ATGATAAGGA ACAATATAAT TATTATGGAA AGCTTTATAA CTTAGGAATT

541 AGTGGATCTG GAGGTATGAC TTTCTATGGA AATGCTAATG TTCCATATAA AATTTATGTA

601 CATCAATATG GTGAAATATT GAATTTAAAA CATGAATTAA CTCATGCATT AGAAAGTTAT

661 GCATCTGGAC ATAAATTGCA TGGTTCTGAC GTAAATAGCA GAATATTTAC GGAAGGATTA

721 GCTGATTATA TCCAAGAAGA TAATAGTTTT ATTATGAGAG GATTAAAGGA TCGAGAGATC

781 ACTTCAGATG TATTGAAAGA TTCTTCTGGT AATGTAGATC ATTTAAGTGG TGTTGCAGTG

841 AATGAAAATC AGAGGTTAAG TTATAGTATA GGACATGCAT TTGTAAGCTT TTTACAAGAG

901 AAATATCCTA AGTTAATTTC GGAATATTTA AACGCATTAA AAGAGGATAA TATTATTCGT

961 GCTAAAGAAA TAATTAGTAT GGATAAGTAT CCAGATTTTG AGCCGTGGGT GAAGTCTAAA

1021 GACATTAGTT TATATTTAGA AAATATGAAT GTATTAAAGT TAGGATTAGG TGAGAAAATG

1081 TTTTCTGCTG AAAGTGCTAG CTATTTTGAA GATCAAGGTG TCAATAAAGA ATATTACCAT

1141 GAAAATATTT ATGATATGAG TGGTAAACTA GTAGGTGAAA TGTCACCTGT AGTGCATTAT

1201 GCACAAAAAA ATGTGATTCG TATTTGGAAT ATTGCAAGTC CTGATATGAT AGAGGTGCGA

1261 CCAGAATATA ACTTTCTGAA ATTGGTAACT ACTCCATCTG GTAAGTCTGC ATATGTATAT

1321 TGTGATAAGA ATGGGCATGA GTATTTTAAT ACTAAAGATT ACATAGATTC TGCGTTTAAT

1381 ATATTGGCAA GATATGATGT TAAGCTTCGT GAAAGTAGTG ATGCTTTGGA TATTAGAGGT

1441 CGTTACTCAG ATGCTGCTAA AGTGTTTAGT AAGCTGCCTA ATGCGGATTT GCTGTTGGAT

1501 AAGTTTTTAG AAAAAATAGG TTATAGTAGT TATAAGCAGA TAATAATGAG TAATCCAGAA

1561 CAGCTTAATT CTATTAAGGC TTATGTAGTA AAAGAAGTGT TTGAAAATTT TAGGGAATCT

1621 GAGGTCAAAA AGGTGTTGAG TGGTGAGTCT CATCCGGAAG TAAGAAATGT ATTAATGGAT

1681 CTTACCTATG TTGATTTAAA GAGTGTTATA GGAGTAAATG GTGCAGATAT TGACAGTATT

1741 ATTTCTAATC CAGATGTAAT GTTGCGTACT GCTGTGTTAG GTAAAGGAAA TGCAAGTGGG

1801 ATATCTCTAT ATGTAGATGA TCAGAAAGTT GGTGAGCTGT CAACTGAAGC AGGTTATTGT

1861 GTTAAAAATC TTGATACTGG TAAAGTGTAT TTTATGTTCC ATAATGTTGT TGGAATGATA

1921 GCAAGTGGTT ATGAAGACAG AGCATATATG GTTGTATTAG AAAAAGATGG TAAGTTTACT

1981 ACTGCTCTAG TTAATAATAT ACAAAAAGCA GCAGATGGAA ATGTTGTATG GGATAATCAA

2041 TTTAATCATC CGAATATTAA TAACTTGCAC TCAAATTATA AGGAGCTGTT GTTAAATGAT

2101 GCTTCAGTTA AAGATTACTC TCATCTTGCG GATGTGAAAT TTAATAAAGA TGATACAGTA

2161 ATTGTTAAAG GTGAATTATT AGATGATAAA GGTACTGTAA GTGTAGATGA TGATGTACAT

2221 CGTGCAGTTG TTAAGCATGA TGATCAAATA CTACATCAGT TTAAGAGTAT GTCTTTTTAC

2281 ATTACTGAAC CATCAGCTGA TTCAGGTGAC AATTATGGAA GTGATTTTTT CATTTCTGAT

2341 GAAGGAAAAA ATCTTAGATT TCAACTTCCT AAAGCTATTA CGCATTTGAA ATTGGTTAAT

2401 GTTAATGGAA ATAATAAGTT GGTACCATGT ACTAAAGATG GGAATGAACA TCCTGAAGGT

2461 ATGCCATCTG ATTTAACGGA TGAATATAGA TATATAGATC CTATTTTTGC TCATACATTT

2521 GAGAAACAAA GTTATTCTAA AAATAGTATT AGTGTTGGGT TAGTGGACTT CAGTAAATAT

2581 AAAGAAGGAT CTATGTTTAA ATTACAGCAT TATTCTGATG ATTATCATAT TCATAAGGAT

2641 GAACAAGGTA ATGTTATTAG GCCTAATAAC AGATCTTACG TTACAAAAGT GGATTTAGTA

2701 TATGATGATA AAGTTATTGG GATGTTGTCT GATAGTATAA ATCAATTTCA GGGTGATATT

2761 TTCATTTCTG CAAGCCTTAA TTATAGCCAC AATGATTTTC TTTCATCTAA GTACTTTCAG

2821 AAAGTTAATA TTGAGGCGTT AGAAAATGGA ATATATAGTG GAAGATATGA TGTAGGAGAT

2881 GGTGACCAAA TAGCAGGTCT TAATACTGAT ACAGGTTATA GTGATAAAGC TATTTTTTAC

2941 TTTAAAAATG ATAGCGCATC TACTGATATG CCGGCTAGTG ATGTTACTAC TATTTTACCT

3001 TATATAAATG AGCTTTAA

SEQ ID NO: 12 Ribosomal Protein L1 Protein Sequence

1 MTIFLESDDD KSNFKKTLEN GTKDKTNLDN TYYDYHHEDD MGNTEYHYVS LDRVDHVKMP

61 EEPVGYGGDT LPIVPTTAAS VSGSDAGVAV GNVKDFEDNV FHHTSTIRND ELKIDLRIHT

121 LKDLSDKRLR EIEKGFNDTV TKFKNNFGLE PNDGETIFDL YLFDDKEQYN YYGKLYNLGI

181 SGSGGMTFYG NANVPYKIYV HQYGEILNLK HELTRALESY ASGHKLHGSD VNSRIFTEGL

241 ADYIQEDNSF IMRGLKDREI TSDVLKDSSG NVDHLSGVAV NENQRLSYSI GHAFVSFLQE

301 KYPKLISEYL NALKEDNIIR AKEIISMDKY PDFEPWVKSK DISLYLENMN VLKLGLGEKM

361 FSAESASYFE DQGVNKEYYH ENIYDMSGKL VGEMSPVVHY AQKNVIRIWN IASPDMIEVR

421 PEYNFLKLVT TPSGKSAYVY CDKNGHEYFN TKDYIDSAFN ILARYDVKLR ESSDALDIRG

481 RYSDAAKVFS KLPNADLLLD KFLEKIGYSS YKQIIMSNPE QLNSIKAYVV KEVFENFRES

541 EVKKVLSGES HPEVRNVLMD LTYVDLKSVI GVNGADIDSI ISNPDVMLRT AVLGKGNASG

601 ISLYVDDQKV GELSTEAGYC VKNLDTGKVY FMFHNVVGMI ASGYEDRAYM VVLEKDGKFT

661 TALVNNIQKA ADGNVVWDNQ FNHPNINNLH SNYKELLLND ASVKDYSHLA DVKFNKDDTV

721 IVKGELLDDK GTVSVDDDVH RAVVKHDDQI LHQFKSMSFY ITEPSADSGD NYGSDFFISD

781 EGKNLRFQLP KAITHLKLVN VNGNNKLVPC TKDGNEHPEG MPSDLTDEYR YIDPIFAHTF

841 EKQSYSKNSI SVGLVDFSKY KEGSMFKLQH YSDDYHIHKD EQGNVIRPNN RSYVTKVDLV

901 YDDKVIGMLS DSINQFQGDI FISASLNYSH NDFLSSKYFQ KVNIEALENG IYSGRYDVGD

961 GDQIAGLNTD TGYSDKAIFY FKNDSASTDM PASDVTTILP YINEL.

SEQ ID NO: 13 Type IV Secretory Protein VirD4 Nucleotide Sequence

1 ATGGATAGTA TAAGTGCAAA TCACATACGC AATATTTTAT TCCTTGTTTT AGGCGCATTT

61 TTTGGACTGG AATTTTGCTT TTATTTATCA GGTGTATTAT TCATCTTAAT GGTCTGGGGA

121 CCAAATTACC TAGATTTTAA TGCTATAAAT CCCAGTTTGA GTGATTTTCC AGACAGAATT

181 TGGCCAACTA TTTTTGACTA TGTACAACAT TGGTGGAAGA ACCCTTCTGC ATACGATGCA

241 GTTTTATTAC TTAAGCTAAT AACGTCATTA TGTACACCAG TAGGTATTCT AAGCATAGTA

301 TTATGGAACC TTAGAAATAT ATTATTCGAT TGGAGGCCAT TTAAGAAGAA AGAATCACTG

361 CATGGAGATT CAAGATGGGC AACAGAAAAA GATATTCGCA AAATAGGATT ACGTAGTAGA

421 AAAGGAATAT TATTAGGGAA AGACAAGAGA GGATATCTCA TTGCAGATGG ATATCAACAT

481 GCATTGTTAT TTGCACCAAC TGGATCCGGA AAAGGTGTAG GTTTTGTAAT ACCAAACTTA

541 TTATTCTGGG AAGATTCTGT AGTAGTACAC GATATAAAAT TAGAGAACTA TGATCTTACA

601 AGTGGGTGGA GAAAAAAAAG GGGACAAGAA GTTTTCGTGT GGAACCCAGC ACAACCTGAC

661 GGTATAAGTC ACTGTTACAA CCCATTAGAT TGGATAAGCT CTAAGCCTGG ACAAATGGTA

721 GATGATGTAC AAAAAATTGC CAATCTAATA ATGCCTGAAC AAGATTTTTG GTATAACGAA

781 GCACGTAGTT TATTTGTAGG AGTAGTATTA TACTTACTAG CAGTACCAGA AAAAGTAAAA

841 TCCTTTGGAG AAGTTGTAAG AACAATGCGC AGCGATGACG TAGTCTACAA CTTAGCAGTA

901 GTACTAGACA CAATAGGGAA AAAGATTCAC CCAGTTGCAT ACATGAATAT AGCTGCATTT

961 TTACAAAAAG CAGACAAAGA ACGCTCAGGT GTTGTATCAA CTATGAACTC ATCTTTAGAA

1021 TTATGGGCAA ACCCATTAAT AGATACAGCA ACAGCATCAA GTGATTTTAA TATTCAAGAA

1081 TTTAAAAGGA AAAAAGTAAC AGTATATGTT GGATTAACAC CAGATAATTT AACTCGTCTT

1141 AGACCTTTAA TGCAGGTATT TTATCAACAA GCTACAGAAT TTTTATGTAG AACTTTACCA

1201 TCAGATGATG AACCATATGG TGTACTGTTC TTAATGGATG AGTTTCCAAC ATTAGGAAAA

1261 ATGGAGCAAT TTCAAACAGG TATCGCATAT TTCCGTGGAT ATAGAGTTAG ACTATTTTTG

1321 ATTATTCAAG ATACTGAACA GCTTAAGGGT ATATATGAAG AAGCAGGAAT GAACTCATTC

1381 TTATCAAACT CTACTTATAG AATAACTTTT GCTGCAAATA ATATAGAAAC TGCAAATTTA

1441 ATATCACAGT TAATAGGAAA TAAAACTGTT AACCAAGAGT CTTTAAACAG ACCTAAATTT

1501 TTAGATTTGA ACCCTGCATC ACGTTCATTA CATATATCAG AAACACAAAG AGCTTTACTA

1561 TTACCTCAAG AAGTAATAAT GTTACCCAGA GATGAGCAAA TACTTTTAAT AGAATCTACT

1621 TATCCTATAA AATCAAAGAA AATAAAATAC TATGAAGACA AAAATTTTAC AAAAAAACTA

1681 TTAAAGAGTA CCTTTGTTCC AACTCAAGAG CCTTATGATC CCAACAAAAC AAAAACAGCA

1741 ACAAAAGAAA ACGAAGAACC TATGCCAAGT ATTGAAAGCG ATCTTCCTAA AAATACATCT

1801 GACAATACTG AAAACAATAT GGAAGATGGT GCAATGTACA GCAGCATAGA AGAAGATTAT

1861 GACGATGATG ATGATGATTT TAATTTTGAA GACTTAGATG AATATATGGA TGAAGAAGAA

1921 GATTATGATG ATGAAGAATA TGATGATATA GATTATGATG ATAATAACAA TAGTAATGAG

1981 GAGTATGAAG AAGATAATCC AGAAGAAGAT GACAATAGCA ATAATCTAGA CGATGAGGAA

2041 GAGGAAGAAG ATAATATTAT AGATTATGAA GATGAAGAAG AATATGATGA TAACATAGAC

2101 TACAAAGATG ATGACAATAA CTACAACAAA GATACCACTG ACGATCAAGA CTCAAAAAAA

2161 CATAATGAAT AG

SEQ ID NO: 14 Type IV Secretory Protein VirD4 Protein Sequence

1 MDSISANHIR NILFLVLGAF FGLEFCFYLS GVLFILMVWG PNYLDFNAIN PSLSDFPDRI

61 WPTIFDYVQH WWKNPSAYDA VLLLKLITSL CTPVGILSIV LWNLRNILFD WRPFKKKESL

121 HGDSRWATEK DIRKIGLRSR KGILLGKDKR GYLIADGYQH ALLFAPTGSG KGVGFVIPNL

181 LFWEDSVVVH DIKLENYDLT SGWRKKRGQE VFVWNPAQPD GISHCYNPLD WISSKPGQMV

241 DDVQKIANLI MPEQDFWYNE ARSLFVGVVL YLLAVPEKVK SFGEVVRTMR SDDVVYNLAV

301 VLDTIGKKIH PVAYMNIAAF LQKADKERSG VVSTMNSSLE LWANPLIDTA TASSDFNIQE

361 FKRKKVTVYV GLTPDNLTRL RPLMQVFYQQ ATEFLCRTLP SDDEPYGVLF LMDEFPTLGK

421 MEQFQTGIAY FRGYRVRLFL IIQDTEQLKG IYEEAGMNSF LSNSTYRITF AANNIETANL

481 ISQLIGNKTV NQESLNRPKF LDLNPASRSL HISETQRALL LPQEVIMLPR DEQILLIEST

541 YPIKSKKIKY YEDKNFTKKL LKSTFVPTQE PYDPNKTKTA TKENEEPMPS IESDLPKNTS

601 DNTENNMEDG AMYSSIEEDY DDDDDDFNFE DLDEYMDEEE DYDDEEYDDI DYDDNNNSNE

661 EYEEDNPEED DNSNNLDDEE EEEDNIIDYE DEEEYDDNID YKDDDNNYNK DTTDDQDSKK

721 HNE.

SEQ ID NO: 15

SEQ ID NO: 16

SEQ ID NO: 18  E. canis  P1401 (72, 89)

SEQ ID NO: 19  E. canis  P1403 (64, 89)

SEQ ID NO: 20  E. canis

SEQ ID NO: 21

XPEVKAEDLQPAVDGSVEHX,

wherein X = 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,

12, 13, 14, or 15 amino acids.

SEQ ID NO: 22

SEQ ID NO: 23

SEQ ID NO: 24

SEQ ID NO: 25

Wherein the X at position 1 is C or is absent, the X at position

4 is H or Q and the X at position 25 is D or G.

SEQ ID NO: 26

Wherein the X at position 1 is C or is absent and the X at position

14 is G or D.

SEQ ID NO: 27

Wherein the X at position 1 is C or is absent, and the X at position

3 is G or D.

SEQ ID NO: 28

Wherein the X at position 1 is C or is absent, and the X at position

14 is G or D.

SEQ ID NO: 29

Wherein the X at position 1 is C or is absent, and the X at position

3 is G or D.

SEQ ID NO: 30

Wherein the X at position 1 is C or is absent, the X at position 14

is G or D, and the X at position 25 is E or G.

SEQ ID NO: 31

Wherein the X at position 1 is C or is absent, the X at position 3 is

G or D, the X at position 14 is E or G.

SEQ ID NO: 32

Wherein the X at position 1 is C or is absent, the X at position 3 is

G or D, and the X at position 14 is G or F.

SEQ ID NO: 33

Wherein the X at position 1 is absent or c, the X at position 4 is H

or Q, the X at position 25 is D or G, and the X at position 36 is F or

G.

Other embodiments of the invention provide the following polypeptides:

(a) SEQ ID NO:33, wherein the X at position 1 is absent or C, the X at position 4 is H or Q, the X at position 25 is D or G, and the X at position 36 is E or G; (b) Amino acids 1-27 of SEQ ID NO:33, wherein the X at position 1 is C, the X at position 4 is H, the X at position 25 is D or G; (c) Amino acids 13-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G; and a C is optionally present at the amino terminus; (d) Amino acids 24-49 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (e) Amino acids 1-27 of SEQ ID NO:33, wherein the X at position 1 is C or absent, and wherein the X at position 25 is D or G; (f) Amino acids 13-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (g) Amino acids 24-49 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (h) Amino acids 13-27 of SEQ ID NO:33, wherein the X at position 25 is D or G, and a C is optionally present at the amino terminus; (i) Amino acids 24-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (j) Amino acids 13-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (k) Amino acids 24-49 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus; (l) Amino acids 24-41 of SEQ ID NO:33, wherein the X at position 25 is D or G, the X at position 36 is E or G, and a C is optionally present at the amino terminus.